MRIQC: individual T1w report

Summary

  • BIDS filename: sub-HC16_ses-pre_run-2_T1w.
  • Date and time: 2020-07-23, 04:40.
  • MRIQC version: 0.15.2.

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6058537413801995
cnr1.981945991628793
efc0.7086815259970989
fber34.28089904785156
fwhmavg3.567141613512115
fwhmx3.52279994750619
fwhmy3.652162445578539
fwhmz3.5264624474516144
icvscsf0.21165323170516837
icvsgm0.41513834096661106
icvswm0.37320842732822057
inumed1.4248223304748535
inurange0.6234794676303865
qi10.0
qi20.004939545281343402
rpvecsf21.060949935435175
rpvegm11.116652520376809
rpvewm14.083465993914531
sizex224
sizey320
sizez320
snrcsf1.7544170757214863
snrgm8.830087677567517
snrtotal9.142525425971089
snrwm16.84307152462426
snrdcsf44.32182106128168
snrdgm80.27046537174212
snrdtotal75.5925841366872
snrdwm102.18546597703781
spacingx0.800000011920929
spacingy0.800000011920929
spacingz0.800000011920929
summarybgk16904.9859332516
summarybgmad6.41158270041561
summarybgmean136.10472106933594
summarybgmedian135.8793182373047
summarybgn7134994.0
summarybgp05125.45708694458007
summarybgp95146.98619155883787
summarybgstdv16.43265151977539
summarycsfk20.495041747696195
summarycsfmad86.56692560761098
summarycsfmean486.3186950683594
summarycsfmedian433.7616271972656
summarycsfn198530.0
summarycsfp05320.5713577270508
summarycsfp95728.3834899902342
summarycsfstdv247.23912048339844
summarygmk0.5053439455977755
summarygmmad81.1060511733634
summarygmmean797.8798217773438
summarygmmedian785.5780029296875
summarygmn97459.0
summarygmp05672.3609069824219
summarygmp95963.5191345214844
summarygmstdv88.96559143066406
summarywmk5.000882813693391
summarywmmad48.833934498892766
summarywmmean1005.6837158203125
summarywmmedian1000.0521850585938
summarywmn586267.0
summarywmp05922.5753967285157
summarywmp951105.9373901367185
summarywmstdv59.37464141845703
tpmoverlapcsf0.12384841591119766
tpmoverlapgm0.3859199285507202
tpmoverlapwm0.46905943751335144
wm2max0.39125031660268855
AcquisitionMatrixPE320
AcquisitionNumber1
AcquisitionTime12:54:35.347500
BaseResolution320
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20200427
DeviceSerialNumber167017
DwellTime6.6e-06
EchoTime0.00314
FlipAngle9
ImageOrientationPatientDICOM[0.0188587, 0.984726, 0.173085, -0.0205654, 0.173461, -0.984626]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'FM', 'FIL']
ImagingFrequency123.25
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressUniversity_Street_3801_Montreal_District_CA_H3A_2B4
InstitutionNameMc_Connell_Brain_Imaging_Centre
InstitutionalDepartmentNameDepartment
InversionTime0.9
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps319
PhaseResolution1
PixelBandwidth235
ProcedureStepDescriptionFunctional_Dr.Bernhardt
ProtocolNamemprage-0.8iso
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE320
RefLinesPE32
RepetitionTime2.3
SAR0.0466685
ScanOptionsIR
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptionmprage-0.8iso
SeriesNumber7
ShimSetting[316, -11616, -6446, 315, 74, -354, -15, 12]
SliceThickness0.8
SoftwareVersionssyngo_MR_E11
StationNameMRC35056
TxRefAmp227.753
md5sum2a0404377fe22c09ccddea18aeffa806
softwaremriqc
version0.15.2
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.