MRIQC: individual T1w report

Summary

  • BIDS filename: sub-HC40_ses-pre_run-2_T1w.
  • Date and time: 2020-07-25, 04:58.
  • MRIQC version: 0.15.2.

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.4943460354649403
cnr2.353687943670302
efc0.703721113789551
fber37.95537567138672
fwhmavg3.636516612478347
fwhmx3.573837446745672
fwhmy3.7192374445790435
fwhmz3.616474946110324
icvscsf0.19591334458423643
icvsgm0.4308406738174393
icvswm0.3732459815983243
inumed1.4165518283843994
inurange0.64433878660202
qi10.0
qi20.004056366689875698
rpvecsf21.909734085709694
rpvegm10.626513737800181
rpvewm13.787210668567957
sizex224
sizey320
sizez320
snrcsf1.4092474720417338
snrgm9.811938586231962
snrtotal9.465058849590308
snrwm17.173990490497232
snrdcsf47.029196674574415
snrdgm80.05249074562028
snrdtotal77.10022255598021
snrdwm104.21898024774592
spacingx0.800000011920929
spacingy0.800000011920929
spacingz0.800000011920929
summarybgk13044.864950755598
summarybgmad6.28638859828533
summarybgmean130.07284545898438
summarybgmedian130.05625915527344
summarybgn7561556.0
summarybgp05119.64767074584961
summarybgp95140.9893798828125
summarybgstdv13.679363250732422
summarycsfk19.90490279996101
summarycsfmad97.37845661098527
summarycsfmean523.7401733398438
summarycsfmedian451.2706298828125
summarycsfn147312.0
summarycsfp05322.7953475952148
summarycsfp951125.6044677734342
summarycsfstdv320.21990966796875
summarygmk1.9634322129408401
summarygmmad64.51328547548368
summarygmmean779.4854125976562
summarygmmedian768.1470336914062
summarygmn125259.0
summarygmp05674.1235290527344
summarygmp95928.9709777832031
summarygmstdv78.28666687011719
summarywmk3.4789348369238073
summarywmmad50.12089548226598
summarywmmean1003.9898071289062
summarywmmedian1000.03759765625
summarywmn583975.0
summarywmp05917.8523681640625
summarywmp951101.460607910156
summarywmstdv58.2297248840332
tpmoverlapcsf0.10527301579713821
tpmoverlapgm0.38088667392730713
tpmoverlapwm0.45523178577423096
wm2max0.3702801861510765
AcquisitionMatrixPE320
AcquisitionNumber1
AcquisitionTime10:48:18.897500
BaseResolution320
BodyPartExaminedBRAIN
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20200427
DeviceSerialNumber167017
DwellTime6.6e-06
EchoTime0.00314
FlipAngle9
ImageOrientationPatientDICOM[0.0223981, 0.991686, 0.126715, 0.0102982, 0.126511, -0.991912]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM', 'FM', 'FIL']
ImagingFrequency123.25
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressUniversity_Street_3801_Montreal_District_CA_H3A_2B4
InstitutionNameMc_Connell_Brain_Imaging_Centre
InstitutionalDepartmentNameDepartment
InversionTime0.9
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
ModalityMR
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps319
PhaseResolution1
PixelBandwidth235
ProcedureStepDescriptionFunctional_Dr.Bernhardt
ProtocolNamemprage-0.8iso
PulseSequenceDetails%SiemensSeq%_tfl
ReceiveCoilActiveElementsHC1-7
ReceiveCoilNameHeadNeck_64
ReconMatrixPE320
RefLinesPE32
RepetitionTime2.3
SAR0.0498173
ScanOptionsIR
ScanningSequenceGR_IR
SequenceName_tfl3d1_16ns
SequenceVariantSK_SP_MP
SeriesDescriptionmprage-0.8iso
SeriesNumber7
ShimSetting[316, -11622, -6440, 403, 57, -175, 42, 15]
SliceThickness0.8
SoftwareVersionssyngo_MR_E11
StationNameMRC35056
TxRefAmp241.39
md5sum487ff690a450112d2acfb0ce4c043c1f
softwaremriqc
version0.15.2
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.