Sat May 22 04:55:05 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01 /opt/freesurfer/bin/recon-all -autorecon-hemi rh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 8 -subjid sub-01 -sd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer subjid sub-01 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a Linux blg5521.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse 67108864 kbytes vmemoryuse unlimited descriptors 51200 memorylocked unlimited maxproc 767932 maxlocks unlimited maxsignal 767932 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196638260 56269956 114278936 2261496 26089368 133751460 Swap: 0 0 0 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-04:55:06-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Tessellate rh Sat May 22 04:55:07 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 0 found - 0 modified | TOTAL: 3 pass 1 (yz+): 3 found - 3 modified | TOTAL: 6 pass 2 (yz+): 0 found - 3 modified | TOTAL: 6 pass 1 (yz-): 2 found - 2 modified | TOTAL: 8 pass 2 (yz-): 0 found - 2 modified | TOTAL: 8 pass 1 (xz+): 2 found - 2 modified | TOTAL: 10 pass 2 (xz+): 0 found - 2 modified | TOTAL: 10 pass 1 (xz-): 2 found - 2 modified | TOTAL: 12 pass 2 (xz-): 0 found - 2 modified | TOTAL: 12 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 3 found - 3 modified | TOTAL: 3 pass 2 (-+): 0 found - 3 modified | TOTAL: 3 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 15 (out of 511009: 0.002935) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 50: 1833 vertices, 1977 faces slice 60: 8997 vertices, 9303 faces slice 70: 18969 vertices, 19349 faces slice 80: 30566 vertices, 30989 faces slice 90: 43258 vertices, 43764 faces slice 100: 57453 vertices, 57975 faces slice 110: 72136 vertices, 72566 faces slice 120: 86836 vertices, 87334 faces slice 130: 102006 vertices, 102562 faces slice 140: 118109 vertices, 118687 faces slice 150: 134390 vertices, 134960 faces slice 160: 149095 vertices, 149651 faces slice 170: 165011 vertices, 165616 faces slice 180: 180009 vertices, 180568 faces slice 190: 193483 vertices, 193975 faces slice 200: 204740 vertices, 205185 faces slice 210: 214934 vertices, 215329 faces slice 220: 224678 vertices, 225077 faces slice 230: 233262 vertices, 233624 faces slice 240: 240054 vertices, 240328 faces slice 250: 241690 vertices, 241766 faces slice 260: 241690 vertices, 241766 faces slice 270: 241690 vertices, 241766 faces slice 280: 241690 vertices, 241766 faces slice 290: 241690 vertices, 241766 faces slice 300: 241690 vertices, 241766 faces slice 310: 241690 vertices, 241766 faces slice 320: 241690 vertices, 241766 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -0.80000 0.00000 0.00000 127.99999; 0.00000 0.00000 0.80000 -127.99999; 0.00000 -0.80000 0.00000 127.99999; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 241690 voxel in cpt #1: X=-76 [v=241690,e=725298,f=483532] located at (29.360125, -14.878757, 30.054834) For the whole surface: X=-76 [v=241690,e=725298,f=483532] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Sat May 22 04:55:14 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Sat May 22 04:55:21 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_inflate -no-save-sulc -n 50 ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix niterations = 50 Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 46.9 mm, total surface area = 85013 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 1.6 minutes step 000: RMS=0.141 (target=0.015) step 005: RMS=0.108 (target=0.015) step 010: RMS=0.081 (target=0.015) step 015: RMS=0.068 (target=0.015) step 020: RMS=0.059 (target=0.015) step 025: RMS=0.052 (target=0.015) step 030: RMS=0.047 (target=0.015) step 035: RMS=0.042 (target=0.015) step 040: RMS=0.039 (target=0.015) step 045: RMS=0.036 (target=0.015) step 050: RMS=0.034 (target=0.015) step 055: RMS=0.033 (target=0.015) step 060: RMS=0.031 (target=0.015) step 065: RMS=0.031 (target=0.015) step 070: RMS=0.031 (target=0.015) step 075: RMS=0.030 (target=0.015) step 080: RMS=0.030 (target=0.015) step 085: RMS=0.029 (target=0.015) step 090: RMS=0.029 (target=0.015) step 095: RMS=0.029 (target=0.015) step 100: RMS=0.029 (target=0.015) step 105: RMS=0.029 (target=0.015) step 110: RMS=0.028 (target=0.015) step 115: RMS=0.028 (target=0.015) step 120: RMS=0.028 (target=0.015) step 125: RMS=0.028 (target=0.015) step 130: RMS=0.028 (target=0.015) step 135: RMS=0.028 (target=0.015) step 140: RMS=0.028 (target=0.015) step 145: RMS=0.028 (target=0.015) step 150: RMS=0.028 (target=0.015) step 155: RMS=0.028 (target=0.015) step 160: RMS=0.028 (target=0.015) step 165: RMS=0.028 (target=0.015) step 170: RMS=0.028 (target=0.015) step 175: RMS=0.028 (target=0.015) step 180: RMS=0.028 (target=0.015) step 185: RMS=0.028 (target=0.015) step 190: RMS=0.028 (target=0.015) step 195: RMS=0.028 (target=0.015) step 200: RMS=0.028 (target=0.015) step 205: RMS=0.028 (target=0.015) step 210: RMS=0.028 (target=0.015) step 215: RMS=0.028 (target=0.015) step 220: RMS=0.028 (target=0.015) step 225: RMS=0.028 (target=0.015) step 230: RMS=0.028 (target=0.015) step 235: RMS=0.028 (target=0.015) step 240: RMS=0.028 (target=0.015) step 245: RMS=0.028 (target=0.015) step 250: RMS=0.028 (target=0.015) step 255: RMS=0.028 (target=0.015) step 260: RMS=0.029 (target=0.015) step 265: RMS=0.030 (target=0.015) step 270: RMS=0.030 (target=0.015) step 275: RMS=0.030 (target=0.015) step 280: RMS=0.030 (target=0.015) step 285: RMS=0.030 (target=0.015) step 290: RMS=0.030 (target=0.015) step 295: RMS=0.030 (target=0.015) step 300: RMS=0.030 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 458.778780 mris_inflate stimesec 1.840349 mris_inflate ru_maxrss 385812 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 694833 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 17008 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 92492 mris_inflate ru_nivcsw 507 #-------------------------------------------- #@# QSphere rh Sat May 22 04:56:57 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.75 +- 0.41 (0.00-->5.55) (max @ vno 91993 --> 93636) face area 0.02 +- 0.02 (-0.06-->0.40) == Number of threads available to mris_sphere for OpenMP = 8 == scaling brain by 0.294... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.235, avgs=0 005/300: dt: 0.9000, rms radial error=174.978, avgs=0 010/300: dt: 0.9000, rms radial error=174.425, avgs=0 015/300: dt: 0.9000, rms radial error=173.698, avgs=0 020/300: dt: 0.9000, rms radial error=172.869, avgs=0 025/300: dt: 0.9000, rms radial error=171.981, avgs=0 030/300: dt: 0.9000, rms radial error=171.061, avgs=0 035/300: dt: 0.9000, rms radial error=170.123, avgs=0 040/300: dt: 0.9000, rms radial error=169.177, avgs=0 045/300: dt: 0.9000, rms radial error=168.229, avgs=0 050/300: dt: 0.9000, rms radial error=167.282, avgs=0 055/300: dt: 0.9000, rms radial error=166.339, avgs=0 060/300: dt: 0.9000, rms radial error=165.400, avgs=0 065/300: dt: 0.9000, rms radial error=164.466, avgs=0 070/300: dt: 0.9000, rms radial error=163.536, avgs=0 075/300: dt: 0.9000, rms radial error=162.612, avgs=0 080/300: dt: 0.9000, rms radial error=161.693, avgs=0 085/300: dt: 0.9000, rms radial error=160.779, avgs=0 090/300: dt: 0.9000, rms radial error=159.869, avgs=0 095/300: dt: 0.9000, rms radial error=158.966, avgs=0 100/300: dt: 0.9000, rms radial error=158.067, avgs=0 105/300: dt: 0.9000, rms radial error=157.173, avgs=0 110/300: dt: 0.9000, rms radial error=156.285, avgs=0 115/300: dt: 0.9000, rms radial error=155.401, avgs=0 120/300: dt: 0.9000, rms radial error=154.522, avgs=0 125/300: dt: 0.9000, rms radial error=153.649, avgs=0 130/300: dt: 0.9000, rms radial error=152.780, avgs=0 135/300: dt: 0.9000, rms radial error=151.916, avgs=0 140/300: dt: 0.9000, rms radial error=151.057, avgs=0 145/300: dt: 0.9000, rms radial error=150.203, avgs=0 150/300: dt: 0.9000, rms radial error=149.354, avgs=0 155/300: dt: 0.9000, rms radial error=148.509, avgs=0 160/300: dt: 0.9000, rms radial error=147.670, avgs=0 165/300: dt: 0.9000, rms radial error=146.835, avgs=0 170/300: dt: 0.9000, rms radial error=146.004, avgs=0 175/300: dt: 0.9000, rms radial error=145.179, avgs=0 180/300: dt: 0.9000, rms radial error=144.358, avgs=0 185/300: dt: 0.9000, rms radial error=143.541, avgs=0 190/300: dt: 0.9000, rms radial error=142.730, avgs=0 195/300: dt: 0.9000, rms radial error=141.923, avgs=0 200/300: dt: 0.9000, rms radial error=141.120, avgs=0 205/300: dt: 0.9000, rms radial error=140.322, avgs=0 210/300: dt: 0.9000, rms radial error=139.528, avgs=0 215/300: dt: 0.9000, rms radial error=138.739, avgs=0 220/300: dt: 0.9000, rms radial error=137.955, avgs=0 225/300: dt: 0.9000, rms radial error=137.175, avgs=0 230/300: dt: 0.9000, rms radial error=136.399, avgs=0 235/300: dt: 0.9000, rms radial error=135.627, avgs=0 240/300: dt: 0.9000, rms radial error=134.860, avgs=0 245/300: dt: 0.9000, rms radial error=134.098, avgs=0 250/300: dt: 0.9000, rms radial error=133.339, avgs=0 255/300: dt: 0.9000, rms radial error=132.585, avgs=0 260/300: dt: 0.9000, rms radial error=131.836, avgs=0 265/300: dt: 0.9000, rms radial error=131.090, avgs=0 270/300: dt: 0.9000, rms radial error=130.349, avgs=0 275/300: dt: 0.9000, rms radial error=129.611, avgs=0 280/300: dt: 0.9000, rms radial error=128.878, avgs=0 285/300: dt: 0.9000, rms radial error=128.150, avgs=0 290/300: dt: 0.9000, rms radial error=127.425, avgs=0 295/300: dt: 0.9000, rms radial error=126.704, avgs=0 300/300: dt: 0.9000, rms radial error=125.988, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 30145.77 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00008 epoch 2 (K=40.0), pass 1, starting sse = 5680.70 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00002 epoch 3 (K=160.0), pass 1, starting sse = 687.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.04/10 = 0.00368 epoch 4 (K=640.0), pass 1, starting sse = 48.11 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.04/10 = 0.00353 final distance error %24.32 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.04 hours mris_sphere utimesec 529.397817 mris_sphere stimesec 1.760734 mris_sphere ru_maxrss 386116 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 646585 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 17008 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 89586 mris_sphere ru_nivcsw 461 FSRUNTIME@ mris_sphere 0.0366 hours 1 threads #-------------------------------------------- #@# Fix Topology Copy rh Sat May 22 04:59:09 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology rh Sat May 22 04:59:09 UTC 2021 mris_fix_topology -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 sub-01 rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-76 (nv=241690, nf=483532, ne=725298, g=39) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 5188 ambiguous faces found in tessellation segmenting defects... 48 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 8 into 7 47 defects to be corrected 0 vertices coincident reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.4038 (-4.7019) -vertex loglikelihood: -5.8718 (-2.9359) -normal dot loglikelihood: -3.5318 (-3.5318) -quad curv loglikelihood: -6.1984 (-3.0992) Total Loglikelihood : -25.0058 CORRECTING DEFECT 0 (vertices=21, convex hull=66, v0=1115) After retessellation of defect 0 (v0=1115), euler #=-44 (238500,714257,475713) : difference with theory (-44) = 0 CORRECTING DEFECT 1 (vertices=8, convex hull=20, v0=5186) After retessellation of defect 1 (v0=5186), euler #=-43 (238501,714266,475722) : difference with theory (-43) = 0 CORRECTING DEFECT 2 (vertices=20, convex hull=55, v0=10349) After retessellation of defect 2 (v0=10349), euler #=-42 (238503,714293,475748) : difference with theory (-42) = 0 CORRECTING DEFECT 3 (vertices=37, convex hull=75, v0=11226) After retessellation of defect 3 (v0=11226), euler #=-41 (238512,714350,475797) : difference with theory (-41) = 0 CORRECTING DEFECT 4 (vertices=37, convex hull=52, v0=15765) After retessellation of defect 4 (v0=15765), euler #=-40 (238518,714387,475829) : difference with theory (-40) = 0 CORRECTING DEFECT 5 (vertices=57, convex hull=84, v0=16293) After retessellation of defect 5 (v0=16293), euler #=-39 (238527,714451,475885) : difference with theory (-39) = 0 CORRECTING DEFECT 6 (vertices=28, convex hull=28, v0=30129) After retessellation of defect 6 (v0=30129), euler #=-38 (238530,714471,475903) : difference with theory (-38) = 0 CORRECTING DEFECT 7 (vertices=92, convex hull=128, v0=42886) After retessellation of defect 7 (v0=42886), euler #=-36 (238555,714605,476014) : difference with theory (-37) = -1 CORRECTING DEFECT 8 (vertices=104, convex hull=100, v0=50484) After retessellation of defect 8 (v0=50484), euler #=-35 (238564,714677,476078) : difference with theory (-36) = -1 CORRECTING DEFECT 9 (vertices=19, convex hull=45, v0=59043) After retessellation of defect 9 (v0=59043), euler #=-34 (238570,714712,476108) : difference with theory (-35) = -1 CORRECTING DEFECT 10 (vertices=78, convex hull=93, v0=60129) After retessellation of defect 10 (v0=60129), euler #=-33 (238585,714795,476177) : difference with theory (-34) = -1 CORRECTING DEFECT 11 (vertices=35, convex hull=28, v0=92045) After retessellation of defect 11 (v0=92045), euler #=-32 (238588,714810,476190) : difference with theory (-33) = -1 CORRECTING DEFECT 12 (vertices=20, convex hull=42, v0=110620) After retessellation of defect 12 (v0=110620), euler #=-31 (238592,714836,476213) : difference with theory (-32) = -1 CORRECTING DEFECT 13 (vertices=31, convex hull=62, v0=110897) After retessellation of defect 13 (v0=110897), euler #=-30 (238601,714889,476258) : difference with theory (-31) = -1 CORRECTING DEFECT 14 (vertices=12, convex hull=30, v0=113029) After retessellation of defect 14 (v0=113029), euler #=-29 (238603,714902,476270) : difference with theory (-30) = -1 CORRECTING DEFECT 15 (vertices=7, convex hull=19, v0=113225) After retessellation of defect 15 (v0=113225), euler #=-28 (238604,714911,476279) : difference with theory (-29) = -1 CORRECTING DEFECT 16 (vertices=79, convex hull=98, v0=121032) After retessellation of defect 16 (v0=121032), euler #=-27 (238623,715014,476364) : difference with theory (-28) = -1 CORRECTING DEFECT 17 (vertices=43, convex hull=78, v0=121870) After retessellation of defect 17 (v0=121870), euler #=-26 (238634,715082,476422) : difference with theory (-27) = -1 CORRECTING DEFECT 18 (vertices=249, convex hull=105, v0=122745) After retessellation of defect 18 (v0=122745), euler #=-25 (238645,715160,476490) : difference with theory (-26) = -1 CORRECTING DEFECT 19 (vertices=129, convex hull=35, v0=126383) After retessellation of defect 19 (v0=126383), euler #=-24 (238651,715191,476516) : difference with theory (-25) = -1 CORRECTING DEFECT 20 (vertices=33, convex hull=41, v0=129561) After retessellation of defect 20 (v0=129561), euler #=-23 (238657,715227,476547) : difference with theory (-24) = -1 CORRECTING DEFECT 21 (vertices=43, convex hull=26, v0=138299) After retessellation of defect 21 (v0=138299), euler #=-22 (238658,715234,476554) : difference with theory (-23) = -1 CORRECTING DEFECT 22 (vertices=31, convex hull=24, v0=141275) After retessellation of defect 22 (v0=141275), euler #=-21 (238660,715245,476564) : difference with theory (-22) = -1 CORRECTING DEFECT 23 (vertices=43, convex hull=27, v0=148825) After retessellation of defect 23 (v0=148825), euler #=-20 (238663,715265,476582) : difference with theory (-21) = -1 CORRECTING DEFECT 24 (vertices=608, convex hull=428, v0=154619) After retessellation of defect 24 (v0=154619), euler #=-20 (238795,715894,477079) : difference with theory (-20) = 0 CORRECTING DEFECT 25 (vertices=26, convex hull=22, v0=154892) After retessellation of defect 25 (v0=154892), euler #=-19 (238798,715909,477092) : difference with theory (-19) = 0 CORRECTING DEFECT 26 (vertices=39, convex hull=29, v0=155469) After retessellation of defect 26 (v0=155469), euler #=-18 (238801,715926,477107) : difference with theory (-18) = 0 CORRECTING DEFECT 27 (vertices=134, convex hull=47, v0=156033) After retessellation of defect 27 (v0=156033), euler #=-17 (238806,715956,477133) : difference with theory (-17) = 0 CORRECTING DEFECT 28 (vertices=6, convex hull=15, v0=157755) After retessellation of defect 28 (v0=157755), euler #=-16 (238807,715964,477141) : difference with theory (-16) = 0 CORRECTING DEFECT 29 (vertices=72, convex hull=75, v0=157828) After retessellation of defect 29 (v0=157828), euler #=-15 (238818,716024,477191) : difference with theory (-15) = 0 CORRECTING DEFECT 30 (vertices=40, convex hull=61, v0=164366) After retessellation of defect 30 (v0=164366), euler #=-14 (238827,716071,477230) : difference with theory (-14) = 0 CORRECTING DEFECT 31 (vertices=45, convex hull=63, v0=169505) After retessellation of defect 31 (v0=169505), euler #=-13 (238840,716135,477282) : difference with theory (-13) = 0 CORRECTING DEFECT 32 (vertices=11, convex hull=25, v0=173622) After retessellation of defect 32 (v0=173622), euler #=-12 (238842,716152,477298) : difference with theory (-12) = 0 CORRECTING DEFECT 33 (vertices=496, convex hull=187, v0=173674) After retessellation of defect 33 (v0=173674), euler #=-11 (238893,716404,477500) : difference with theory (-11) = 0 CORRECTING DEFECT 34 (vertices=27, convex hull=66, v0=177088) After retessellation of defect 34 (v0=177088), euler #=-10 (238902,716456,477544) : difference with theory (-10) = 0 CORRECTING DEFECT 35 (vertices=24, convex hull=79, v0=188149) After retessellation of defect 35 (v0=188149), euler #=-9 (238908,716502,477585) : difference with theory (-9) = 0 CORRECTING DEFECT 36 (vertices=30, convex hull=33, v0=188512) After retessellation of defect 36 (v0=188512), euler #=-8 (238910,716524,477606) : difference with theory (-8) = 0 CORRECTING DEFECT 37 (vertices=35, convex hull=65, v0=190877) After retessellation of defect 37 (v0=190877), euler #=-7 (238917,716575,477651) : difference with theory (-7) = 0 CORRECTING DEFECT 38 (vertices=17, convex hull=19, v0=201438) After retessellation of defect 38 (v0=201438), euler #=-6 (238919,716588,477663) : difference with theory (-6) = 0 CORRECTING DEFECT 39 (vertices=10, convex hull=24, v0=202148) After retessellation of defect 39 (v0=202148), euler #=-5 (238921,716601,477675) : difference with theory (-5) = 0 CORRECTING DEFECT 40 (vertices=62, convex hull=32, v0=203030) After retessellation of defect 40 (v0=203030), euler #=-4 (238926,716626,477696) : difference with theory (-4) = 0 CORRECTING DEFECT 41 (vertices=99, convex hull=60, v0=204649) After retessellation of defect 41 (v0=204649), euler #=-3 (238929,716659,477727) : difference with theory (-3) = 0 CORRECTING DEFECT 42 (vertices=40, convex hull=41, v0=212938) After retessellation of defect 42 (v0=212938), euler #=-2 (238934,716687,477751) : difference with theory (-2) = 0 CORRECTING DEFECT 43 (vertices=12, convex hull=29, v0=222576) After retessellation of defect 43 (v0=222576), euler #=-1 (238935,716703,477767) : difference with theory (-1) = 0 CORRECTING DEFECT 44 (vertices=46, convex hull=99, v0=229546) After retessellation of defect 44 (v0=229546), euler #=0 (238946,716777,477831) : difference with theory (0) = 0 CORRECTING DEFECT 45 (vertices=17, convex hull=53, v0=234000) After retessellation of defect 45 (v0=234000), euler #=1 (238950,716809,477860) : difference with theory (1) = 0 CORRECTING DEFECT 46 (vertices=43, convex hull=86, v0=238788) After retessellation of defect 46 (v0=238788), euler #=2 (238959,716871,477914) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.71 +- 0.18 (0.10-->6.39) (max @ vno 174479 --> 182460) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.71 +- 0.18 (0.10-->6.39) (max @ vno 174479 --> 182460) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 181 mutations (37.4%), 303 crossovers (62.6%), 42 vertices were eliminated building final representation... 2731 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=238959, nf=477914, ne=716871, g=0) writing corrected surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 25.1 minutes 0 defective edges removing intersecting faces 000: 296 intersecting 001: 4 intersecting mris_fix_topology utimesec 1520.005703 mris_fix_topology stimesec 0.631519 mris_fix_topology ru_maxrss 771152 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 370661 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 0 mris_fix_topology ru_oublock 22496 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 5389 mris_fix_topology ru_nivcsw 508 FSRUNTIME@ mris_fix_topology rh 0.4190 hours 1 threads mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 238959 - 716871 + 477914 = 2 --> 0 holes F =2V-4: 477914 = 477918-4 (0) 2E=3F: 1433742 = 1433742 (0) total defect index = 0 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 72 intersecting 001: 2 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf rh Sat May 22 05:24:25 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs sub-01 rh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/filled.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/brain.finalsurfs.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/../mri/aseg.presurf.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... 47176 bright wm thresholded. 800 bright non-wm voxels segmented. reading original surface position from /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.orig... computing class statistics... border white: 469153 voxels (1.43%) border gray 502265 voxels (1.53%) WM (103.0): 102.4 +- 6.5 [70.0 --> 110.0] GM (82.0) : 81.0 +- 9.7 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 68.3 (was 70) setting MAX_BORDER_WHITE to 115.5 (was 105) setting MIN_BORDER_WHITE to 78.0 (was 85) setting MAX_CSF to 58.7 (was 40) setting MAX_GRAY to 102.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 68.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 49.0 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.67 +- 0.17 (0.02-->2.92) (max @ vno 238890 --> 238892) face area 0.18 +- 0.08 (0.00-->1.29) mean absolute distance = 1.36 +- 1.50 7686 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... spring scale = 1.25 using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=109+-3.5, GM=78+-5.2 mean inside = 100.7, mean outside = 82.7 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... mean border=95.4, 108 (108) missing vertices, mean dist -0.7 [2.0 (%51.7)->0.5 (%48.3))] %43 local maxima, %42 large gradients and %11 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=blg55, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.71 +- 0.19 (0.02-->3.41) (max @ vno 165645 --> 167061) face area 0.18 +- 0.08 (0.00-->1.52) mean absolute distance = 0.55 +- 0.76 8397 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=5006792.5, rms=9.308 001: dt: 0.5000, sse=2442663.8, rms=5.613 (39.703%) 002: dt: 0.5000, sse=1649835.0, rms=3.717 (33.776%) 003: dt: 0.5000, sse=1496695.4, rms=3.256 (12.405%) 004: dt: 0.5000, sse=1474305.0, rms=3.158 (2.989%) rms = 3.12, time step reduction 1 of 3 to 0.250... 005: dt: 0.5000, sse=1469144.0, rms=3.125 (1.073%) 006: dt: 0.2500, sse=1177522.8, rms=1.841 (41.078%) 007: dt: 0.2500, sse=1132885.6, rms=1.498 (18.613%) 008: dt: 0.2500, sse=1114854.4, rms=1.376 (8.187%) 009: dt: 0.2500, sse=1119058.8, rms=1.311 (4.730%) rms = 1.28, time step reduction 2 of 3 to 0.125... 010: dt: 0.2500, sse=1125267.4, rms=1.277 (2.544%) rms = 1.24, time step reduction 3 of 3 to 0.062... 011: dt: 0.1250, sse=1097571.2, rms=1.239 (2.998%) positioning took 1.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=94.8, 202 (62) missing vertices, mean dist -0.2 [0.9 (%39.3)->0.3 (%60.7))] %79 local maxima, %13 large gradients and % 3 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=blg55, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.70 +- 0.18 (0.03-->3.52) (max @ vno 67265 --> 62935) face area 0.21 +- 0.09 (0.00-->2.05) mean absolute distance = 0.30 +- 0.54 10315 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1957093.2, rms=4.222 012: dt: 0.5000, sse=1513823.4, rms=2.839 (32.748%) rms = 2.88, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=1293344.2, rms=1.939 (31.703%) 014: dt: 0.2500, sse=1223698.8, rms=1.340 (30.900%) 015: dt: 0.2500, sse=1189391.9, rms=1.155 (13.788%) 016: dt: 0.2500, sse=1191920.6, rms=1.090 (5.621%) rms = 1.05, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=1176903.6, rms=1.046 (4.034%) rms = 1.01, time step reduction 3 of 3 to 0.062... 018: dt: 0.1250, sse=1170686.4, rms=1.012 (3.321%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group mean border=94.8, 179 (49) missing vertices, mean dist -0.1 [0.5 (%35.7)->0.2 (%64.3))] %88 local maxima, % 6 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=blg55, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.70 +- 0.18 (0.03-->3.69) (max @ vno 67265 --> 62935) face area 0.20 +- 0.09 (0.00-->2.27) mean absolute distance = 0.22 +- 0.41 6666 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1340083.2, rms=2.282 019: dt: 0.5000, sse=1335635.9, rms=2.143 (6.105%) rms = 2.61, time step reduction 1 of 3 to 0.250... 020: dt: 0.2500, sse=1186311.5, rms=1.368 (36.179%) 021: dt: 0.2500, sse=1170005.6, rms=1.068 (21.945%) 022: dt: 0.2500, sse=1152681.0, rms=1.003 (6.059%) rms = 0.98, time step reduction 2 of 3 to 0.125... 023: dt: 0.2500, sse=1152694.1, rms=0.980 (2.240%) rms = 0.94, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=1138426.6, rms=0.937 (4.470%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 1 vertex label from ripped group mean border=94.5, 182 (23) missing vertices, mean dist -0.0 [0.4 (%30.3)->0.1 (%69.7))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=blg55, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=1210577.9, rms=1.557 rms = 1.51, time step reduction 1 of 3 to 0.250... 025: dt: 0.5000, sse=1240055.6, rms=1.513 (2.821%) 026: dt: 0.2500, sse=1156557.0, rms=1.022 (32.412%) 027: dt: 0.2500, sse=1126967.2, rms=0.843 (17.532%) rms = 0.90, time step reduction 2 of 3 to 0.125... 028: dt: 0.1250, sse=1117717.9, rms=0.784 (7.037%) 029: dt: 0.1250, sse=1116678.1, rms=0.726 (7.329%) rms = 0.71, time step reduction 3 of 3 to 0.062... 030: dt: 0.1250, sse=1114275.5, rms=0.713 (1.883%) positioning took 0.8 minutes generating cortex label... 24 non-cortical segments detected only using segment with 12533 vertices erasing segment 0 (vno[0] = 18309) erasing segment 1 (vno[0] = 31058) erasing segment 2 (vno[0] = 58133) erasing segment 3 (vno[0] = 59757) erasing segment 4 (vno[0] = 61420) erasing segment 6 (vno[0] = 70010) erasing segment 7 (vno[0] = 85958) erasing segment 8 (vno[0] = 114133) erasing segment 9 (vno[0] = 156413) erasing segment 10 (vno[0] = 158007) erasing segment 11 (vno[0] = 159560) erasing segment 12 (vno[0] = 161192) erasing segment 13 (vno[0] = 162819) erasing segment 14 (vno[0] = 164165) erasing segment 15 (vno[0] = 164187) erasing segment 16 (vno[0] = 165585) erasing segment 17 (vno[0] = 165628) erasing segment 18 (vno[0] = 169817) erasing segment 19 (vno[0] = 174390) erasing segment 20 (vno[0] = 178736) erasing segment 21 (vno[0] = 178740) erasing segment 22 (vno[0] = 181223) erasing segment 23 (vno[0] = 238692) writing cortex label to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label... writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.curv writing smoothed area to rh.area writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.area vertex spacing 0.70 +- 0.19 (0.03-->3.72) (max @ vno 62935 --> 67265) face area 0.20 +- 0.09 (0.00-->2.43) refinement took 5.7 minutes #-------------------------------------------- #@# Smooth2 rh Sat May 22 05:30:09 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Sat May 22 05:30:16 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_inflate -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/touch/rusage.mris_inflate.rh.dat -n 50 ../surf/rh.smoothwm ../surf/rh.inflated niterations = 50 Reading ../surf/rh.smoothwm avg radius = 46.9 mm, total surface area = 90359 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.154 (target=0.015) step 005: RMS=0.110 (target=0.015) step 010: RMS=0.081 (target=0.015) step 015: RMS=0.067 (target=0.015) step 020: RMS=0.057 (target=0.015) step 025: RMS=0.048 (target=0.015) step 030: RMS=0.041 (target=0.015) step 035: RMS=0.035 (target=0.015) step 040: RMS=0.031 (target=0.015) step 045: RMS=0.027 (target=0.015) step 050: RMS=0.024 (target=0.015) step 055: RMS=0.022 (target=0.015) step 060: RMS=0.021 (target=0.015) step 065: RMS=0.020 (target=0.015) step 070: RMS=0.019 (target=0.015) step 075: RMS=0.018 (target=0.015) step 080: RMS=0.017 (target=0.015) step 085: RMS=0.017 (target=0.015) step 090: RMS=0.016 (target=0.015) step 095: RMS=0.016 (target=0.015) step 100: RMS=0.015 (target=0.015) step 105: RMS=0.015 (target=0.015) inflation complete. inflation took 0.7 minutes mris_inflate utimesec 205.035444 mris_inflate stimesec 1.829085 mris_inflate ru_maxrss 381760 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 742774 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 18680 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 87419 mris_inflate ru_nivcsw 188 #-------------------------------------------- #@# Curv .H and .K rh Sat May 22 05:30:56 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf mris_curvature -w rh.white.preaparc total integrated curvature = 31.682*4pi (398.126) --> -31 handles ICI = 248.1, FI = 2754.2, variation=42327.842 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 393 vertices thresholded to be in k1 ~ [-0.17 0.25], k2 ~ [-0.10 0.06] total integrated curvature = 0.625*4pi (7.859) --> 0 handles ICI = 1.6, FI = 9.0, variation=158.026 235 vertices thresholded to be in [-0.01 0.01] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 249 vertices thresholded to be in [-0.12 0.13] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.015, std = 0.022 done. #----------------------------------------- #@# Curvature Stats rh Sat May 22 05:32:31 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-01 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-01/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 442 ] Gb_filter = 0 WARN: S lookup min: -0.398899 WARN: S explicit min: 0.000000 vertex = 573 #-------------------------------------------- #@# Sphere rh Sat May 22 05:32:37 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_sphere -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 8 == scaling brain by 0.279... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=blg55, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 singular matrix in quadratic form -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %20.11 pass 1: epoch 2 of 3 starting distance error %20.10 unfolding complete - removing small folds... starting distance error %20.07 removing remaining folds... final distance error %20.07 MRISunfold() return, current seed 1234 -01: dt=0.0000, 617 negative triangles 095: dt=0.9900, 617 negative triangles 096: dt=0.9900, 233 negative triangles 097: dt=0.9900, 161 negative triangles 098: dt=0.9900, 113 negative triangles 099: dt=0.9900, 100 negative triangles 100: dt=0.9900, 82 negative triangles 101: dt=0.9900, 72 negative triangles 102: dt=0.9900, 62 negative triangles 103: dt=0.9900, 58 negative triangles 104: dt=0.9900, 50 negative triangles 105: dt=0.9900, 49 negative triangles 106: dt=0.9900, 37 negative triangles 107: dt=0.9900, 38 negative triangles 108: dt=0.9900, 32 negative triangles 109: dt=0.9900, 30 negative triangles 110: dt=0.9900, 33 negative triangles 111: dt=0.9900, 28 negative triangles 112: dt=0.9900, 28 negative triangles 113: dt=0.9900, 28 negative triangles 114: dt=0.9900, 27 negative triangles 115: dt=0.9900, 24 negative triangles 116: dt=0.9900, 23 negative triangles 117: dt=0.9900, 20 negative triangles 118: dt=0.9900, 19 negative triangles 119: dt=0.9900, 20 negative triangles 120: dt=0.9900, 14 negative triangles 121: dt=0.9900, 19 negative triangles 122: dt=0.9900, 17 negative triangles 123: dt=0.9900, 15 negative triangles 124: dt=0.9900, 14 negative triangles 125: dt=0.9900, 8 negative triangles 126: dt=0.9900, 6 negative triangles 127: dt=0.9900, 6 negative triangles 128: dt=0.9900, 9 negative triangles 129: dt=0.9900, 6 negative triangles 130: dt=0.9900, 2 negative triangles 131: dt=0.9900, 5 negative triangles 132: dt=0.9900, 1 negative triangles 133: dt=0.9900, 1 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.18 hours mris_sphere utimesec 4534.459780 mris_sphere stimesec 3.359097 mris_sphere ru_maxrss 527904 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 1698567 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 16808 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 104318 mris_sphere ru_nivcsw 4275 FSRUNTIME@ mris_sphere 0.1783 hours 1 threads #-------------------------------------------- #@# Surf Reg rh Sat May 22 05:43:19 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_register -curv -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts cmdline mris_register -curv -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=blg55, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=blg55, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 5.796 curvature mean = 0.018, std = 0.807 curvature mean = 0.023, std = 0.869 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, -16.00, 16.00) sse = 588596.0, tmin=1.2290 d=32.00 min @ (-8.00, 0.00, -16.00) sse = 538956.9, tmin=2.4610 d=16.00 min @ (4.00, 4.00, 4.00) sse = 477015.4, tmin=3.6838 d=4.00 min @ (0.00, 0.00, 1.00) sse = 475379.9, tmin=6.1944 d=2.00 min @ (0.00, -0.50, -0.50) sse = 474460.3, tmin=7.4541 d=1.00 min @ (0.00, 0.00, 0.25) sse = 474459.3, tmin=8.7045 d=0.50 min @ (0.00, 0.00, -0.12) sse = 474414.3, tmin=9.9502 tol=1.0e+00, sigma=0.5, host=blg55, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 9.95 min curvature mean = -0.011, std = 0.818 curvature mean = 0.010, std = 0.947 curvature mean = -0.019, std = 0.818 curvature mean = 0.004, std = 0.978 curvature mean = -0.023, std = 0.816 curvature mean = 0.001, std = 0.991 2 Reading smoothwm curvature mean = -0.034, std = 0.341 curvature mean = 0.033, std = 0.235 curvature mean = 0.056, std = 0.296 curvature mean = 0.032, std = 0.291 curvature mean = 0.024, std = 0.478 curvature mean = 0.032, std = 0.317 curvature mean = 0.013, std = 0.622 curvature mean = 0.031, std = 0.330 curvature mean = 0.004, std = 0.735 MRISregister() return, current seed 0 -01: dt=0.0000, 14 negative triangles 122: dt=0.9900, 14 negative triangles expanding nbhd size to 1 123: dt=0.9900, 16 negative triangles 124: dt=0.9900, 13 negative triangles 125: dt=0.9900, 14 negative triangles 126: dt=0.9900, 14 negative triangles 127: dt=0.9900, 14 negative triangles 128: dt=0.9900, 12 negative triangles 129: dt=0.9900, 8 negative triangles 130: dt=0.9900, 5 negative triangles 131: dt=0.9900, 4 negative triangles 132: dt=0.9900, 5 negative triangles 133: dt=0.9900, 4 negative triangles 134: dt=0.9900, 3 negative triangles 135: dt=0.9900, 3 negative triangles 136: dt=0.9900, 3 negative triangles 137: dt=0.9900, 3 negative triangles 138: dt=0.9900, 1 negative triangles 139: dt=0.9900, 1 negative triangles 140: dt=0.9900, 1 negative triangles 141: dt=0.9900, 1 negative triangles writing registered surface to ../surf/rh.sphere.reg... registration took 0.69 hours mris_register utimesec 13292.680445 mris_register stimesec 8.066928 mris_register ru_maxrss 430980 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 4145493 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 5582 mris_register ru_oublock 16816 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 123071 mris_register ru_nivcsw 9234 FSRUNTIME@ mris_register 0.6916 hours 1 threads #-------------------------------------------- #@# Jacobian white rh Sat May 22 06:24:49 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Sat May 22 06:24:51 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mrisp_paint -a 5 /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Sat May 22 06:24:53 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1840 labels changed using aseg relabeling using gibbs priors... 000: 4497 changed, 238959 examined... 001: 1056 changed, 18632 examined... 002: 241 changed, 5699 examined... 003: 97 changed, 1480 examined... 004: 28 changed, 593 examined... 005: 9 changed, 171 examined... 006: 0 changed, 56 examined... 184 labels changed using aseg 000: 136 total segments, 97 labels (444 vertices) changed 001: 40 total segments, 1 labels (2 vertices) changed 002: 38 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 7 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 2933 vertices marked for relabeling... 2933 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 16 seconds. #-------------------------------------------- #@# Make Pial Surf rh Sat May 22 06:25:09 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs sub-01 rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/filled.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/brain.finalsurfs.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/../mri/aseg.presurf.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... 47176 bright wm thresholded. 800 bright non-wm voxels segmented. reading original surface position from /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.orig... computing class statistics... border white: 469153 voxels (1.43%) border gray 502265 voxels (1.53%) WM (103.0): 102.4 +- 6.5 [70.0 --> 110.0] GM (82.0) : 81.0 +- 9.7 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 68.3 (was 70) setting MAX_BORDER_WHITE to 115.5 (was 105) setting MIN_BORDER_WHITE to 78.0 (was 85) setting MAX_CSF to 58.7 (was 40) setting MAX_GRAY to 102.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 68.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 49.0 (was 40) spring scale = 1.25 using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=109+-3.5, GM=78+-5.2 mean inside = 100.7, mean outside = 82.7 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.70 +- 0.19 (0.03-->3.72) (max @ vno 62935 --> 67265) face area 0.20 +- 0.09 (0.00-->2.43) mean absolute distance = 1.24 +- 1.35 7115 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 150 points - only 0.00% unknown deleting segment 1 with 47 points - only 0.00% unknown deleting segment 2 with 7 points - only 0.00% unknown deleting segment 4 with 436 points - only 0.00% unknown deleting segment 5 with 5 points - only 0.00% unknown deleting segment 6 with 146 points - only 0.00% unknown deleting segment 7 with 34 points - only 0.00% unknown mean border=95.2, 169 (168) missing vertices, mean dist -0.5 [2.2 (%38.1)->0.5 (%61.9))] %42 local maxima, %42 large gradients and %11 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=blg55, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.71 +- 0.19 (0.01-->4.26) (max @ vno 138908 --> 138898) face area 0.20 +- 0.09 (0.00-->2.28) mean absolute distance = 0.53 +- 0.74 7868 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=2414370.5, rms=5.368 001: dt: 0.5000, sse=1536718.9, rms=3.040 (43.379%) 002: dt: 0.5000, sse=1472924.4, rms=2.794 (8.085%) rms = 2.87, time step reduction 1 of 3 to 0.250... 003: dt: 0.2500, sse=1262156.4, rms=1.861 (33.376%) 004: dt: 0.2500, sse=1198331.2, rms=1.358 (27.021%) 005: dt: 0.2500, sse=1182911.5, rms=1.237 (8.942%) 006: dt: 0.2500, sse=1180492.6, rms=1.181 (4.511%) rms = 1.16, time step reduction 2 of 3 to 0.125... 007: dt: 0.2500, sse=1173842.4, rms=1.163 (1.499%) rms = 1.13, time step reduction 3 of 3 to 0.062... 008: dt: 0.1250, sse=1168516.6, rms=1.131 (2.754%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 42 points - only 0.00% unknown deleting segment 1 with 12 points - only 0.00% unknown deleting segment 2 with 5 points - only 0.00% unknown deleting segment 3 with 31 points - only 0.00% unknown deleting segment 4 with 360 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 3 points - only 0.00% unknown deleting segment 6 with 15 points - only 26.67% unknown deleting segment 7 with 15 points - only 0.00% unknown deleting segment 8 with 12 points - only 0.00% unknown deleting segment 9 with 101 points - only 0.00% unknown deleting segment 10 with 52 points - only 0.00% unknown mean border=94.7, 197 (70) missing vertices, mean dist -0.2 [0.9 (%39.2)->0.3 (%60.8))] %80 local maxima, %13 large gradients and % 3 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=blg55, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.70 +- 0.19 (0.03-->4.10) (max @ vno 138908 --> 138898) face area 0.21 +- 0.10 (0.00-->2.42) mean absolute distance = 0.30 +- 0.53 9992 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1880141.5, rms=4.047 009: dt: 0.5000, sse=1476184.5, rms=2.746 (32.156%) rms = 2.83, time step reduction 1 of 3 to 0.250... 010: dt: 0.2500, sse=1275530.5, rms=1.828 (33.430%) 011: dt: 0.2500, sse=1201779.1, rms=1.247 (31.764%) 012: dt: 0.2500, sse=1181670.4, rms=1.093 (12.348%) rms = 1.05, time step reduction 2 of 3 to 0.125... 013: dt: 0.2500, sse=1176385.9, rms=1.045 (4.401%) 014: dt: 0.1250, sse=1172504.9, rms=0.992 (5.125%) rms = 0.98, time step reduction 3 of 3 to 0.062... 015: dt: 0.1250, sse=1169546.5, rms=0.980 (1.125%) positioning took 0.9 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 52 points - only 0.00% unknown deleting segment 1 with 12 points - only 0.00% unknown deleting segment 2 with 5 points - only 0.00% unknown deleting segment 3 with 49 points - only 0.00% unknown deleting segment 4 with 276 points - only 0.00% unknown deleting segment 5 with 12 points - only 0.00% unknown deleting segment 6 with 16 points - only 0.00% unknown deleting segment 7 with 6 points - only 0.00% unknown deleting segment 8 with 28 points - only 0.00% unknown deleting segment 9 with 35 points - only 0.00% unknown deleting segment 10 with 54 points - only 0.00% unknown mean border=94.7, 187 (47) missing vertices, mean dist -0.1 [0.5 (%36.0)->0.2 (%64.0))] %89 local maxima, % 6 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=blg55, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.70 +- 0.19 (0.02-->4.01) (max @ vno 182460 --> 174479) face area 0.20 +- 0.09 (0.00-->2.49) mean absolute distance = 0.21 +- 0.40 6490 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1331156.9, rms=2.235 016: dt: 0.5000, sse=1318481.2, rms=2.126 (4.873%) rms = 2.57, time step reduction 1 of 3 to 0.250... 017: dt: 0.2500, sse=1190100.2, rms=1.352 (36.399%) 018: dt: 0.2500, sse=1161781.6, rms=1.043 (22.895%) 019: dt: 0.2500, sse=1151588.1, rms=0.988 (5.224%) rms = 0.97, time step reduction 2 of 3 to 0.125... 020: dt: 0.2500, sse=1149877.5, rms=0.965 (2.342%) rms = 0.92, time step reduction 3 of 3 to 0.062... 021: dt: 0.1250, sse=1137250.6, rms=0.920 (4.668%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 44 points - only 0.00% unknown deleting segment 1 with 14 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 2 with 4 points - only 0.00% unknown deleting segment 3 with 65 points - only 0.00% unknown deleting segment 4 with 41 points - only 0.00% unknown deleting segment 5 with 193 points - only 0.00% unknown deleting segment 6 with 12 points - only 0.00% unknown deleting segment 7 with 16 points - only 0.00% unknown deleting segment 8 with 62 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 9 with 1 points - only 0.00% unknown deleting segment 10 with 37 points - only 0.00% unknown deleting segment 11 with 23 points - only 0.00% unknown deleting segment 12 with 40 points - only 12.50% unknown deleting segment 13 with 8 points - only 0.00% unknown deleting segment 14 with 45 points - only 0.00% unknown mean border=94.5, 213 (35) missing vertices, mean dist -0.0 [0.4 (%30.2)->0.1 (%69.8))] %91 local maxima, % 4 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=blg55, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=1206231.8, rms=1.538 rms = 1.51, time step reduction 1 of 3 to 0.250... 022: dt: 0.5000, sse=1212948.0, rms=1.512 (1.651%) 023: dt: 0.2500, sse=1148849.9, rms=1.027 (32.114%) 024: dt: 0.2500, sse=1133334.5, rms=0.855 (16.675%) rms = 0.91, time step reduction 2 of 3 to 0.125... 025: dt: 0.1250, sse=1122889.9, rms=0.797 (6.845%) 026: dt: 0.1250, sse=1123156.1, rms=0.741 (7.054%) rms = 0.73, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=1120125.1, rms=0.726 (2.048%) positioning took 0.8 minutes generating cortex label... 19 non-cortical segments detected only using segment with 12538 vertices erasing segment 0 (vno[0] = 17300) erasing segment 1 (vno[0] = 29927) erasing segment 2 (vno[0] = 58154) erasing segment 3 (vno[0] = 61376) erasing segment 5 (vno[0] = 144365) erasing segment 6 (vno[0] = 146796) erasing segment 7 (vno[0] = 158007) erasing segment 8 (vno[0] = 159560) erasing segment 9 (vno[0] = 159562) erasing segment 10 (vno[0] = 161129) erasing segment 11 (vno[0] = 161259) erasing segment 12 (vno[0] = 164187) erasing segment 13 (vno[0] = 165585) erasing segment 14 (vno[0] = 165628) erasing segment 15 (vno[0] = 174390) erasing segment 16 (vno[0] = 178736) erasing segment 17 (vno[0] = 178740) erasing segment 18 (vno[0] = 181223) writing cortex label to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label... writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.curv writing smoothed area to rh.area writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.area vertex spacing 0.70 +- 0.19 (0.01-->3.95) (max @ vno 138898 --> 138908) face area 0.20 +- 0.09 (0.00-->2.78) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group deleting segment 0 with 4 points - only 0.00% unknown deleting segment 1 with 751 points - only 0.00% unknown deleting segment 2 with 42 points - only 0.00% unknown deleting segment 3 with 18 points - only 0.00% unknown deleting segment 4 with 18 points - only 0.00% unknown deleting segment 5 with 93 points - only 0.00% unknown deleting segment 6 with 13 points - only 0.00% unknown deleting segment 8 with 30 points - only 0.00% unknown deleting segment 10 with 8 points - only 0.00% unknown deleting segment 11 with 7 points - only 0.00% unknown deleting segment 12 with 9 points - only 0.00% unknown deleting segment 15 with 65 points - only 0.00% unknown deleting segment 17 with 32 points - only 9.38% unknown deleting segment 18 with 45 points - only 0.00% unknown deleting segment 19 with 38 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=76.6, 178 (178) missing vertices, mean dist 0.8 [1.9 (%0.0)->1.1 (%100.0))] %19 local maxima, %51 large gradients and %25 min vals, 118 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=blg55, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=17444610.0, rms=18.948 001: dt: 0.0500, sse=13262540.0, rms=16.347 (13.724%) 002: dt: 0.0500, sse=11121998.0, rms=14.841 (9.216%) 003: dt: 0.0500, sse=9777975.0, rms=13.811 (6.941%) 004: dt: 0.0500, sse=8828269.0, rms=13.034 (5.626%) 005: dt: 0.0500, sse=8102310.5, rms=12.407 (4.810%) 006: dt: 0.0500, sse=7516029.5, rms=11.876 (4.276%) 007: dt: 0.0500, sse=7024480.5, rms=11.412 (3.907%) 008: dt: 0.0500, sse=6600675.5, rms=10.996 (3.644%) 009: dt: 0.0500, sse=6228569.5, rms=10.618 (3.444%) 010: dt: 0.0500, sse=5897052.5, rms=10.268 (3.290%) positioning took 1.2 minutes mean border=70.6, 96 (60) missing vertices, mean dist 0.9 [0.9 (%0.0)->1.1 (%100.0))] %19 local maxima, %52 large gradients and %24 min vals, 274 gradients ignored tol=1.0e-04, sigma=2.0, host=blg55, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=13169072.0, rms=16.279 011: dt: 0.0500, sse=12567192.0, rms=15.867 (2.529%) 012: dt: 0.0500, sse=12045493.0, rms=15.501 (2.306%) 013: dt: 0.0500, sse=11588510.0, rms=15.174 (2.115%) 014: dt: 0.0500, sse=11183521.0, rms=14.877 (1.956%) 015: dt: 0.0500, sse=10821616.0, rms=14.606 (1.818%) 016: dt: 0.0500, sse=10494820.0, rms=14.358 (1.702%) 017: dt: 0.0500, sse=10196779.0, rms=14.127 (1.607%) 018: dt: 0.0500, sse=9920208.0, rms=13.909 (1.540%) 019: dt: 0.0500, sse=9656681.0, rms=13.699 (1.513%) 020: dt: 0.0500, sse=9402879.0, rms=13.493 (1.502%) positioning took 1.2 minutes mean border=68.4, 104 (46) missing vertices, mean dist 0.9 [0.2 (%0.2)->1.2 (%99.8))] %20 local maxima, %51 large gradients and %24 min vals, 322 gradients ignored tol=1.0e-04, sigma=2.0, host=blg55, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=10989248.0, rms=14.737 021: dt: 0.0500, sse=10658242.0, rms=14.487 (1.697%) 022: dt: 0.0500, sse=10350202.0, rms=14.250 (1.634%) 023: dt: 0.0500, sse=10063158.0, rms=14.026 (1.574%) 024: dt: 0.0500, sse=9795360.0, rms=13.813 (1.516%) 025: dt: 0.0500, sse=9542946.0, rms=13.610 (1.474%) 026: dt: 0.0500, sse=9302610.0, rms=13.413 (1.446%) 027: dt: 0.0500, sse=9071821.0, rms=13.221 (1.430%) 028: dt: 0.0500, sse=8848865.0, rms=13.033 (1.423%) 029: dt: 0.0500, sse=8631554.0, rms=12.847 (1.427%) 030: dt: 0.0500, sse=8419013.0, rms=12.662 (1.436%) positioning took 1.2 minutes mean border=67.4, 113 (35) missing vertices, mean dist 0.8 [0.1 (%2.3)->1.0 (%97.7))] %19 local maxima, %52 large gradients and %24 min vals, 280 gradients ignored tol=1.0e-04, sigma=2.0, host=blg55, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=9247023.0, rms=13.364 031: dt: 0.5000, sse=7610651.5, rms=11.930 (10.724%) 032: dt: 0.5000, sse=6326755.5, rms=10.673 (10.540%) 033: dt: 0.5000, sse=5175576.0, rms=9.420 (11.741%) 034: dt: 0.5000, sse=4302392.0, rms=8.334 (11.524%) 035: dt: 0.5000, sse=3588186.8, rms=7.335 (11.991%) 036: dt: 0.5000, sse=3181367.8, rms=6.695 (8.719%) 037: dt: 0.5000, sse=2898149.2, rms=6.215 (7.169%) 038: dt: 0.5000, sse=2776386.5, rms=5.995 (3.554%) 039: dt: 0.5000, sse=2659224.2, rms=5.778 (3.615%) 040: dt: 0.5000, sse=2632299.0, rms=5.725 (0.919%) 041: dt: 0.5000, sse=2572032.2, rms=5.610 (2.010%) rms = 5.63, time step reduction 1 of 3 to 0.250... 042: dt: 0.2500, sse=2292768.8, rms=4.986 (11.120%) 043: dt: 0.2500, sse=2228259.5, rms=4.820 (3.334%) rms = 4.80, time step reduction 2 of 3 to 0.125... 044: dt: 0.2500, sse=2222298.0, rms=4.804 (0.334%) 045: dt: 0.1250, sse=2144957.8, rms=4.611 (4.016%) rms = 4.58, time step reduction 3 of 3 to 0.062... 046: dt: 0.1250, sse=2134165.8, rms=4.584 (0.581%) positioning took 2.4 minutes mean border=64.1, 2860 (15) missing vertices, mean dist 0.3 [0.2 (%17.0)->0.5 (%83.0))] %44 local maxima, %28 large gradients and %22 min vals, 183 gradients ignored tol=1.0e-04, sigma=1.0, host=blg55, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3717249.8, rms=7.044 047: dt: 0.5000, sse=3407350.8, rms=6.514 (7.526%) 048: dt: 0.5000, sse=3124681.0, rms=6.036 (7.345%) 049: dt: 0.5000, sse=3024773.0, rms=5.830 (3.404%) 050: dt: 0.5000, sse=2767808.8, rms=5.336 (8.484%) 051: dt: 0.5000, sse=2682160.8, rms=5.133 (3.797%) 052: dt: 0.5000, sse=2492735.0, rms=4.726 (7.926%) rms = 4.73, time step reduction 1 of 3 to 0.250... 053: dt: 0.2500, sse=2057360.6, rms=3.469 (26.607%) 054: dt: 0.2500, sse=1931535.6, rms=2.994 (13.694%) 055: dt: 0.2500, sse=1909107.2, rms=2.905 (2.957%) 056: dt: 0.2500, sse=1895029.4, rms=2.850 (1.891%) rms = 2.86, time step reduction 2 of 3 to 0.125... 057: dt: 0.1250, sse=1832908.8, rms=2.582 (9.404%) 058: dt: 0.1250, sse=1749225.1, rms=2.172 (15.894%) 059: dt: 0.1250, sse=1732768.8, rms=2.086 (3.964%) rms = 2.06, time step reduction 3 of 3 to 0.062... 060: dt: 0.1250, sse=1728558.9, rms=2.064 (1.046%) positioning took 2.5 minutes mean border=62.3, 3504 (10) missing vertices, mean dist 0.1 [0.2 (%19.6)->0.2 (%80.4))] %52 local maxima, %20 large gradients and %21 min vals, 177 gradients ignored tol=1.0e-04, sigma=0.5, host=blg55, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=2094814.1, rms=3.348 rms = 4.70, time step reduction 1 of 3 to 0.250... 061: dt: 0.2500, sse=1920610.2, rms=2.689 (19.688%) 062: dt: 0.2500, sse=1872128.6, rms=2.466 (8.319%) rms = 2.49, time step reduction 2 of 3 to 0.125... 063: dt: 0.1250, sse=1856112.4, rms=2.388 (3.127%) 064: dt: 0.1250, sse=1833678.6, rms=2.280 (4.522%) 065: dt: 0.1250, sse=1821457.9, rms=2.223 (2.532%) rms = 2.19, time step reduction 3 of 3 to 0.062... 066: dt: 0.1250, sse=1813853.1, rms=2.187 (1.592%) positioning took 1.3 minutes mean border=61.5, 6354 (10) missing vertices, mean dist 0.0 [0.2 (%26.8)->0.1 (%73.2))] %55 local maxima, %17 large gradients and %21 min vals, 155 gradients ignored tol=1.0e-04, sigma=0.2, host=blg55, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=1876340.2, rms=2.463 rms = 3.59, time step reduction 1 of 3 to 0.250... 067: dt: 0.2500, sse=1829903.4, rms=2.234 (9.324%) rms = 2.21, time step reduction 2 of 3 to 0.125... 068: dt: 0.2500, sse=1822145.9, rms=2.211 (1.026%) 069: dt: 0.1250, sse=1804187.8, rms=2.110 (4.555%) rms = 2.07, time step reduction 3 of 3 to 0.062... 070: dt: 0.1250, sse=1795005.6, rms=2.067 (2.044%) positioning took 0.8 minutes writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.area.pial vertex spacing 0.80 +- 0.36 (0.03-->7.68) (max @ vno 156408 --> 154847) face area 0.26 +- 0.20 (0.00-->4.09) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 238959 vertices processed 25000 of 238959 vertices processed 50000 of 238959 vertices processed 75000 of 238959 vertices processed 100000 of 238959 vertices processed 125000 of 238959 vertices processed 150000 of 238959 vertices processed 175000 of 238959 vertices processed 200000 of 238959 vertices processed 225000 of 238959 vertices processed 0 of 238959 vertices processed 25000 of 238959 vertices processed 50000 of 238959 vertices processed 75000 of 238959 vertices processed 100000 of 238959 vertices processed 125000 of 238959 vertices processed 150000 of 238959 vertices processed 175000 of 238959 vertices processed 200000 of 238959 vertices processed 225000 of 238959 vertices processed thickness calculation complete, 178:729 truncations. 41556 vertices at 0 distance 137602 vertices at 1 distance 148178 vertices at 2 distance 83014 vertices at 3 distance 31306 vertices at 4 distance 9592 vertices at 5 distance 2841 vertices at 6 distance 863 vertices at 7 distance 318 vertices at 8 distance 160 vertices at 9 distance 94 vertices at 10 distance 68 vertices at 11 distance 60 vertices at 12 distance 55 vertices at 13 distance 35 vertices at 14 distance 22 vertices at 15 distance 15 vertices at 16 distance 10 vertices at 17 distance 5 vertices at 18 distance 8 vertices at 19 distance 6 vertices at 20 distance writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.thickness positioning took 18.1 minutes #-------------------------------------------- #@# Surf Volume rh Sat May 22 06:43:19 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-01 rh /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.volume masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label Total face volume 271521 Total vertex volume 269154 (mask=0) #@# sub-01 rh 269154 vertexvol Done #----------------------------------------- #@# Cortical Parc 2 rh Sat May 22 06:43:23 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 719 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 61 labels changed using aseg relabeling using gibbs priors... 000: 14462 changed, 238959 examined... 001: 3418 changed, 56419 examined... 002: 1056 changed, 17732 examined... 003: 444 changed, 5936 examined... 004: 218 changed, 2477 examined... 005: 101 changed, 1244 examined... 006: 55 changed, 592 examined... 007: 29 changed, 312 examined... 008: 12 changed, 167 examined... 009: 6 changed, 81 examined... 010: 3 changed, 38 examined... 011: 3 changed, 20 examined... 012: 3 changed, 23 examined... 013: 4 changed, 16 examined... 014: 4 changed, 22 examined... 015: 4 changed, 20 examined... 016: 0 changed, 17 examined... 16 labels changed using aseg 000: 400 total segments, 312 labels (5822 vertices) changed 001: 121 total segments, 35 labels (137 vertices) changed 002: 88 total segments, 2 labels (2 vertices) changed 003: 86 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 40 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 2002 vertices marked for relabeling... 2002 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 21 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Sat May 22 06:43:45 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-01 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 2495 labels changed using aseg relabeling using gibbs priors... 000: 3131 changed, 238959 examined... 001: 783 changed, 14101 examined... 002: 227 changed, 4378 examined... 003: 108 changed, 1386 examined... 004: 55 changed, 628 examined... 005: 37 changed, 348 examined... 006: 19 changed, 197 examined... 007: 15 changed, 123 examined... 008: 20 changed, 89 examined... 009: 11 changed, 99 examined... 010: 5 changed, 53 examined... 011: 6 changed, 35 examined... 012: 8 changed, 35 examined... 013: 5 changed, 42 examined... 014: 3 changed, 25 examined... 015: 3 changed, 21 examined... 016: 2 changed, 15 examined... 017: 2 changed, 12 examined... 018: 3 changed, 12 examined... 019: 2 changed, 18 examined... 020: 0 changed, 12 examined... 423 labels changed using aseg 000: 76 total segments, 43 labels (464 vertices) changed 001: 35 total segments, 2 labels (2 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 6 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1666 vertices marked for relabeling... 1666 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 17 seconds. #----------------------------------------- #@# WM/GM Contrast rh Sat May 22 06:44:02 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts pctsurfcon --s sub-01 --rh-only Log file is /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts/pctsurfcon.log Sat May 22 06:44:02 UTC 2021 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer cd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts /opt/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux blg5521.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer mri_vol2surf --mov /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.wm.mgh --regheader sub-01 --cortex srcvol = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00002; 0.00000 0.00000 1.00000 -0.00003; 0.00000 -1.00000 0.00000 0.00005; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label Reading surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 128002 Masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.wm.mgh Dim: 238959 1 1 mri_vol2surf --mov /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.gm.mgh --projfrac 0.3 --regheader sub-01 --cortex srcvol = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00002; 0.00000 0.00000 1.00000 -0.00003; 0.00000 -1.00000 0.00000 0.00005; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label Reading surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Done reading source surface Reading thickness /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 151957 Masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.cortex.label Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.gm.mgh Dim: 238959 1 1 mri_concat /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.wm.mgh /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/tmp.pctsurfcon.119327/rh.gm.mgh --paired-diff-norm --mul 100 --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.w-g.pct.mgh mri_segstats --in /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.w-g.pct.mgh --annot sub-01 rh aparc --sum /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.w-g.pct.mgh --annot sub-01 rh aparc --sum /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/stats/rh.w-g.pct.stats --snr sysname Linux hostname blg5521.int.ets1.calculquebec.ca machine x86_64 user bpinsard UseRobust 0 Constructing seg from annotation Reading annotation /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.w-g.pct.mgh Vertex Area is 0.408369 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up Started at Sat May 22 04:55:04 UTC 2021 Ended at Sat May 22 06:44:10 UTC 2021 #@#%# recon-all-run-time-hours 1.818 recon-all -s sub-01 finished without error at Sat May 22 06:44:10 UTC 2021 New invocation of recon-all Sat May 22 07:59:23 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01 /opt/freesurfer/bin/recon-all -autorecon-hemi rh -nohyporelabel -openmp 8 -subjid sub-01 -sd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon subjid sub-01 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a Linux blg5521.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse 67108864 kbytes vmemoryuse unlimited descriptors 51200 memorylocked unlimited maxproc 767932 maxlocks unlimited maxsignal 767932 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196638260 53544276 132588756 2249344 10505228 137494136 Swap: 0 0 0 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/22-07:59:23-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bpinsard Machine: blg5521.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #----------------------------------------- #@# Parcellation Stats rh Sat May 22 07:59:24 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-01 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 2247 979 2497 2.662 0.452 0.072 0.014 14 1.3 bankssts 1316 511 1206 1.928 0.803 0.095 0.018 20 1.0 caudalanteriorcingulate 4353 1810 5258 2.734 0.341 0.075 0.016 32 2.9 caudalmiddlefrontal 4969 1763 4093 1.990 0.483 0.098 0.032 68 6.6 cuneus 897 347 1908 3.794 0.759 0.087 0.030 9 1.3 entorhinal 7973 3302 10453 2.703 0.603 0.088 0.023 93 7.9 fusiform 13059 5414 14875 2.401 0.447 0.089 0.021 160 11.4 inferiorparietal 10004 4096 13851 2.753 0.611 0.090 0.024 131 10.5 inferiortemporal 2680 1083 2935 2.081 0.942 0.100 0.037 42 4.2 isthmuscingulate 12381 4638 11859 2.233 0.491 0.090 0.027 140 14.0 lateraloccipital 6291 2554 8234 2.786 0.592 0.100 0.032 92 9.3 lateralorbitofrontal 9714 3878 8569 2.048 0.525 0.102 0.038 121 16.8 lingual 5069 2109 6242 2.505 0.562 0.097 0.030 91 7.0 medialorbitofrontal 9718 4095 13879 2.706 0.755 0.084 0.018 107 7.1 middletemporal 1612 658 1901 2.529 0.648 0.070 0.018 10 1.0 parahippocampal 3132 1250 4078 2.810 0.527 0.084 0.018 25 2.4 paracentral 2932 1242 3635 2.712 0.435 0.078 0.017 26 2.0 parsopercularis 2154 900 3302 2.804 0.570 0.094 0.022 26 2.0 parsorbitalis 3244 1360 4207 2.708 0.510 0.086 0.020 34 2.9 parstriangularis 5333 1955 3849 2.058 0.397 0.086 0.032 58 7.2 pericalcarine 12107 4854 12285 2.229 0.517 0.076 0.017 104 8.9 postcentral 2503 1062 2810 2.255 0.734 0.103 0.030 41 3.0 posteriorcingulate 11830 4641 14572 2.798 0.496 0.072 0.023 92 13.6 precentral 10611 4443 12199 2.457 0.484 0.090 0.023 117 10.1 precuneus 1182 454 1349 2.556 0.658 0.086 0.027 15 1.5 rostralanteriorcingulate 15786 6605 19531 2.555 0.458 0.096 0.024 216 16.0 rostralmiddlefrontal 17698 7416 26213 2.949 0.558 0.087 0.023 182 17.2 superiorfrontal 14891 5962 14359 2.187 0.439 0.087 0.020 166 12.2 superiorparietal 9396 3934 12747 2.790 0.613 0.077 0.017 85 6.7 superiortemporal 11270 4760 12660 2.436 0.442 0.086 0.019 125 9.1 supramarginal 830 361 1299 2.701 0.478 0.131 0.040 17 1.6 frontalpole 1346 572 3653 4.045 0.897 0.096 0.029 18 1.9 temporalpole 932 328 1029 2.721 0.374 0.081 0.018 8 0.7 transversetemporal 6463 2761 8482 2.904 0.938 0.099 0.049 99 15.2 insula mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-01 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 2247 904 2497 2.662 0.452 0.070 0.021 23 1.9 bankssts 1316 641 1206 1.928 0.803 0.084 0.021 12 0.8 caudalanteriorcingulate 4353 1977 5258 2.734 0.341 0.099 0.020 51785 2.6 caudalmiddlefrontal 4969 2274 4093 1.990 0.483 0.086 0.020 43 4.4 cuneus 897 694 1908 3.794 0.759 0.113 0.019 4 0.9 entorhinal 7973 4055 10453 2.703 0.603 0.091 0.025 89 8.4 fusiform 13059 6555 14875 2.401 0.447 0.092 0.022 124 12.4 inferiorparietal 10004 5540 13851 2.753 0.611 0.099 0.023 731 10.2 inferiortemporal 2680 1436 2935 2.081 0.942 0.091 0.024 26 2.3 isthmuscingulate 12381 5690 11859 2.233 0.491 0.086 0.022 109 11.6 lateraloccipital 6291 3153 8234 2.786 0.592 0.093 0.034 122 9.8 lateralorbitofrontal 9714 4417 8569 2.048 0.525 0.091 0.028 99 11.7 lingual 5069 2762 6242 2.505 0.562 0.093 0.022 57 4.6 medialorbitofrontal 9718 5728 13879 2.706 0.755 0.099 0.028 99 13.6 middletemporal 1612 809 1901 2.529 0.648 0.086 0.022 20 1.6 parahippocampal 3132 1506 4078 2.810 0.527 0.080 0.024 62 3.8 paracentral 2932 1398 3635 2.712 0.435 0.082 0.018 40 2.1 parsopercularis 2154 1348 3302 2.804 0.570 0.097 0.019 20 1.7 parsorbitalis 3244 1666 4207 2.708 0.510 0.095 0.021 28 3.0 parstriangularis 5333 1768 3849 2.058 0.397 0.085 0.074 468 26.1 pericalcarine 12107 5867 12285 2.229 0.517 0.079 0.017 90 8.1 postcentral 2503 1263 2810 2.255 0.734 0.089 0.021 22 2.3 posteriorcingulate 11830 5460 14572 2.798 0.496 0.067 0.014 117 6.9 precentral 10611 5095 12199 2.457 0.484 0.092 0.026 112 10.7 precuneus 1182 576 1349 2.556 0.658 0.095 0.031 15 1.3 rostralanteriorcingulate 15786 8245 19531 2.555 0.458 0.095 0.022 204 15.5 rostralmiddlefrontal 17698 9683 26213 2.949 0.558 0.087 0.021 172 14.7 superiorfrontal 14891 6884 14359 2.187 0.439 0.086 0.019 148 11.5 superiorparietal 9396 4996 12747 2.790 0.613 0.089 0.022 162 7.8 superiortemporal 11270 5414 12660 2.436 0.442 0.085 0.021 108 9.6 supramarginal 830 547 1299 2.701 0.478 0.129 0.033 12 1.3 frontalpole 1346 1100 3653 4.045 0.897 0.104 0.016 7 1.1 temporalpole 932 407 1029 2.721 0.374 0.070 0.016 4 0.6 transversetemporal 6463 2852 8482 2.904 0.938 0.100 0.040 208 10.7 insula #----------------------------------------- #@# Parcellation Stats 2 rh Sat May 22 08:01:32 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-01 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 1858 800 2189 2.414 0.383 0.111 0.032 31 2.9 G&S_frontomargin 2077 783 2381 2.437 0.511 0.086 0.026 25 2.4 G&S_occipital_inf 2068 727 2545 2.723 0.579 0.080 0.021 19 1.9 G&S_paracentral 2852 1176 3688 2.642 0.438 0.091 0.022 35 2.7 G&S_subcentral 2220 944 3157 2.538 0.390 0.115 0.034 46 3.2 G&S_transv_frontopol 4795 1998 6332 2.800 0.554 0.090 0.025 56 5.6 G&S_cingul-Ant 2036 835 2423 2.610 0.525 0.089 0.032 30 2.9 G&S_cingul-Mid-Ant 1985 853 2458 2.693 0.476 0.089 0.025 21 2.0 G&S_cingul-Mid-Post 978 399 1853 3.036 0.500 0.130 0.052 23 2.5 G_cingul-Post-dorsal 545 236 872 2.470 0.913 0.115 0.044 11 0.9 G_cingul-Post-ventral 4925 1685 3924 1.953 0.481 0.100 0.038 76 7.9 G_cuneus 1943 799 3051 2.905 0.474 0.091 0.023 31 2.0 G_front_inf-Opercular 707 286 1347 3.171 0.347 0.109 0.031 12 0.9 G_front_inf-Orbital 1246 526 2017 2.850 0.514 0.103 0.027 19 1.5 G_front_inf-Triangul 6542 2669 10724 2.838 0.450 0.111 0.029 125 8.0 G_front_middle 11429 4777 19444 3.063 0.575 0.094 0.024 133 12.0 G_front_sup 971 422 1731 3.387 0.733 0.108 0.040 16 1.6 G_Ins_lg&S_cent_ins 1763 705 2982 3.073 1.039 0.123 0.074 45 6.6 G_insular_short 3613 1421 5025 2.500 0.518 0.109 0.035 66 5.1 G_occipital_middle 2969 907 2387 2.090 0.474 0.082 0.025 36 3.2 G_occipital_sup 3615 1438 5703 2.838 0.543 0.104 0.031 65 4.7 G_oc-temp_lat-fusifor 6295 2260 5684 2.068 0.553 0.103 0.042 88 11.2 G_oc-temp_med-Lingual 1680 647 3093 3.399 0.816 0.086 0.029 15 2.2 G_oc-temp_med-Parahip 4566 1834 7818 2.939 0.631 0.110 0.037 88 7.9 G_orbital 4931 2004 7163 2.539 0.481 0.110 0.029 102 5.8 G_pariet_inf-Angular 5309 2187 7251 2.591 0.496 0.098 0.023 79 5.3 G_pariet_inf-Supramar 5544 2274 6679 2.308 0.489 0.104 0.025 95 5.7 G_parietal_sup 4090 1549 4687 2.260 0.537 0.087 0.024 49 3.9 G_postcentral 4539 1626 7073 3.080 0.472 0.079 0.037 52 9.0 G_precentral 5204 2203 7558 2.587 0.523 0.102 0.028 82 6.3 G_precuneus 1404 586 1917 2.327 0.553 0.111 0.030 40 1.8 G_rectus 956 400 929 2.324 1.179 0.112 0.080 24 4.0 G_subcallosal 655 236 957 2.922 0.374 0.082 0.017 6 0.5 G_temp_sup-G_T_transv 3125 1305 5410 2.988 0.601 0.100 0.025 45 3.3 G_temp_sup-Lateral 1440 626 2765 3.739 0.842 0.072 0.016 8 1.0 G_temp_sup-Plan_polar 1641 683 1985 2.534 0.468 0.075 0.018 19 1.3 G_temp_sup-Plan_tempo 5208 2071 8608 2.941 0.603 0.102 0.032 97 7.0 G_temporal_inf 5722 2326 9384 2.861 0.727 0.097 0.022 90 5.1 G_temporal_middle 755 317 648 2.562 0.481 0.061 0.010 2 0.3 Lat_Fis-ant-Horizont 369 148 335 2.680 0.208 0.059 0.008 1 0.1 Lat_Fis-ant-Vertical 2354 997 2050 2.488 0.427 0.072 0.016 10 1.6 Lat_Fis-post 5801 2050 4845 2.050 0.496 0.093 0.031 65 7.4 Pole_occipital 3610 1568 7507 3.279 0.787 0.099 0.028 55 4.7 Pole_temporal 5500 2300 4347 2.106 0.467 0.096 0.033 60 8.5 S_calcarine 4803 2004 3640 2.159 0.569 0.061 0.012 16 2.4 S_central 1513 628 1366 2.377 0.333 0.083 0.021 13 1.1 S_cingul-Marginalis 898 375 891 2.998 0.328 0.075 0.025 5 1.0 S_circular_insula_ant 1834 781 1875 2.724 0.698 0.057 0.014 6 1.1 S_circular_insula_inf 2309 995 2341 2.825 0.523 0.067 0.016 8 1.8 S_circular_insula_sup 1902 803 2354 2.757 0.615 0.067 0.012 9 1.1 S_collat_transv_ant 862 368 782 2.378 0.403 0.086 0.019 5 0.7 S_collat_transv_post 2803 1215 2796 2.442 0.363 0.063 0.012 12 1.2 S_front_inf 4565 1912 4134 2.367 0.338 0.075 0.015 36 2.7 S_front_middle 4590 1912 4906 2.736 0.333 0.077 0.017 31 3.4 S_front_sup 1097 483 876 2.252 0.312 0.063 0.010 4 0.5 S_interm_prim-Jensen 5733 2374 4895 2.199 0.388 0.076 0.016 42 3.8 S_intrapariet&P_trans 1743 742 1257 2.139 0.306 0.071 0.013 7 0.9 S_oc_middle&Lunatus 2219 930 1756 2.137 0.329 0.077 0.015 14 1.4 S_oc_sup&transversal 1236 543 958 2.024 0.332 0.079 0.013 7 0.7 S_occipital_ant 2335 965 2144 2.356 0.494 0.072 0.016 13 1.6 S_oc-temp_lat 3553 1568 3051 2.292 0.440 0.068 0.014 13 2.0 S_oc-temp_med&Lingual 1018 440 844 2.295 0.262 0.079 0.013 6 0.7 S_orbital_lateral 1192 510 941 2.120 0.410 0.074 0.016 8 0.7 S_orbital_med-olfact 2493 1038 2906 2.680 0.458 0.090 0.025 21 2.8 S_orbital-H_Shaped 4393 1817 3812 2.255 0.366 0.078 0.017 29 3.1 S_parieto_occipital 2513 948 902 1.275 0.441 0.087 0.023 38 2.0 S_pericallosal 6635 2785 5702 2.231 0.348 0.066 0.013 34 3.5 S_postcentral 3235 1387 3043 2.523 0.316 0.067 0.011 14 1.6 S_precentral-inf-part 1737 732 1689 2.652 0.374 0.074 0.013 8 1.0 S_precentral-sup-part 883 366 852 2.352 0.347 0.075 0.020 9 0.8 S_suborbital 2116 880 1909 2.388 0.344 0.081 0.020 12 1.8 S_subparietal 2726 1179 2160 2.228 0.457 0.069 0.012 10 1.3 S_temporal_inf 10609 4605 9889 2.381 0.464 0.066 0.012 54 5.3 S_temporal_sup 540 223 457 2.467 0.258 0.058 0.008 1 0.2 S_temporal_transverse #----------------------------------------- #@# Parcellation Stats 3 rh Sat May 22 08:02:38 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-01 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 1429 557 1283 1.949 0.788 0.094 0.018 21 1.1 caudalanteriorcingulate 4443 1843 5453 2.748 0.351 0.077 0.017 34 3.0 caudalmiddlefrontal 5967 2116 4882 2.022 0.472 0.097 0.031 79 7.9 cuneus 784 306 1740 3.840 0.745 0.087 0.030 7 1.2 entorhinal 7531 3105 9520 2.652 0.557 0.089 0.023 86 7.2 fusiform 12941 5371 14748 2.397 0.447 0.089 0.021 159 11.4 inferiorparietal 10345 4264 14719 2.792 0.636 0.088 0.023 130 10.4 inferiortemporal 2663 1075 2867 2.068 0.939 0.098 0.036 37 4.0 isthmuscingulate 12426 4641 11729 2.211 0.496 0.089 0.027 138 13.9 lateraloccipital 7865 3217 10373 2.665 0.656 0.107 0.040 136 16.0 lateralorbitofrontal 9414 3763 8342 2.055 0.529 0.101 0.037 116 15.5 lingual 3798 1596 4362 2.339 0.682 0.094 0.034 71 5.9 medialorbitofrontal 11645 4876 16048 2.704 0.717 0.086 0.019 134 9.1 middletemporal 1723 705 2023 2.516 0.654 0.070 0.018 11 1.1 parahippocampal 3276 1314 4270 2.812 0.523 0.082 0.018 26 2.3 paracentral 3504 1467 4400 2.705 0.445 0.082 0.018 36 2.7 parsopercularis 1734 723 2492 2.869 0.528 0.089 0.021 17 1.4 parsorbitalis 2899 1230 3527 2.640 0.507 0.082 0.018 26 2.2 parstriangularis 5274 1935 3828 2.062 0.400 0.087 0.033 57 7.8 pericalcarine 13496 5436 13495 2.222 0.507 0.077 0.017 115 9.8 postcentral 2607 1105 2913 2.282 0.732 0.103 0.030 44 3.1 posteriorcingulate 11521 4512 14227 2.799 0.498 0.071 0.023 89 13.6 precentral 10832 4522 12499 2.446 0.494 0.089 0.023 119 10.5 precuneus 1626 638 1777 2.545 0.676 0.082 0.028 18 2.2 rostralanteriorcingulate 10994 4589 13579 2.580 0.469 0.095 0.022 141 10.4 rostralmiddlefrontal 23807 9991 34295 2.860 0.557 0.092 0.025 292 25.8 superiorfrontal 12611 5097 12456 2.203 0.438 0.089 0.021 150 10.6 superiorparietal 12348 5247 18297 2.911 0.759 0.081 0.019 118 10.4 superiortemporal 10489 4423 11698 2.437 0.443 0.084 0.019 113 8.4 supramarginal 911 317 1023 2.735 0.381 0.081 0.019 8 0.7 transversetemporal 5017 2111 7187 3.142 0.733 0.088 0.032 52 6.7 insula /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label #-------------------------------------------- #@# BA_exvivo Labels rh Sat May 22 08:03:41 UTC 2021 mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1681 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 5643 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 3490 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 10177 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 737 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4717 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1361 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 5883 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1470 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 7217 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 888 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 5361 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 3550 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 15806 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 2921 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 9833 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-01 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 2239 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 7594 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-01 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 7740 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 12467 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-01 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 10443 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 18459 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-01 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1471 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 3403 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-01 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 269 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1307 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-01 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 228 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 980 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 338 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 1214 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1478 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 4166 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 209 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1907 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 677 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2860 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 456 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1844 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 355 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1844 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 1620 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 8579 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 288 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1300 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 385 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1563 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 5464 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 8696 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 5287 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 8724 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 214 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 482 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 151 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 845 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-01 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-01 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 238959 Number of reverse mapping hits = 77 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 368 mri_label2label: Done mris_label2annot --s sub-01 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label cmdline mris_label2annot --s sub-01 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname blg5521.int.ets1.calculquebec.ca machine x86_64 user bpinsard subject sub-01 hemi rh SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer ColorTable /opt/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 167544 unhit vertices Writing annot to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.BA_exvivo.annot mris_label2annot --s sub-01 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label cmdline mris_label2annot --s sub-01 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname blg5521.int.ets1.calculquebec.ca machine x86_64 user bpinsard subject sub-01 hemi rh SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer ColorTable /opt/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 197849 unhit vertices Writing annot to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-01 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 1656 605 2135 2.448 0.535 0.096 0.026 23 1.8 BA1_exvivo 7368 3030 7069 2.273 0.405 0.070 0.015 49 4.4 BA2_exvivo 1692 699 1116 2.115 0.348 0.077 0.018 9 1.2 BA3a_exvivo 3393 1345 2755 1.865 0.468 0.071 0.014 24 2.0 BA3b_exvivo 2429 848 3234 3.027 0.358 0.068 0.022 18 2.5 BA4a_exvivo 1926 734 1976 2.816 0.392 0.062 0.051 18 6.2 BA4p_exvivo 12038 4928 18674 3.038 0.537 0.080 0.019 97 9.1 BA6_exvivo 6188 2590 7248 2.667 0.423 0.073 0.015 49 4.1 BA44_exvivo 5910 2483 7831 2.672 0.499 0.089 0.020 65 4.9 BA45_exvivo 9032 3244 7195 2.069 0.493 0.089 0.035 106 14.2 V1_exvivo 15069 5604 12485 2.029 0.490 0.101 0.035 194 22.1 V2_exvivo 3361 1398 3336 2.179 0.451 0.078 0.020 27 2.7 MT_exvivo 797 300 1697 3.878 0.670 0.079 0.027 7 0.9 perirhinal_exvivo 556 221 937 3.167 0.645 0.073 0.022 6 0.6 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-01 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-01/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 272618 Total vertex volume 270052 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1608862 mm^3 (det: 1.210859 ) lhCtxGM: 275672.380 544356.000 diff=-268683.6 pctdiff=-97.465 rhCtxGM: 267632.289 525408.000 diff=-257775.7 pctdiff=-96.317 lhCtxWM: 181349.195 419340.000 diff=-237990.8 pctdiff=-131.233 rhCtxWM: 184010.119 421058.000 diff=-237047.9 pctdiff=-128.823 SubCortGMVol 112077.000 SupraTentVol 1049883.984 (2065053.000) diff=-1015169.016 pctdiff=-96.693 SupraTentVolNotVent 1007110.984 (2022280.000) diff=-1015169.016 pctdiff=-100.800 BrainSegVol 2367218.000 (2362345.000) diff=4873.000 pctdiff=0.206 BrainSegVolNotVent 2316992.000 (1315317.984) diff=1001674.016 pctdiff=43.232 BrainSegVolNotVent 2316992.000 CerebellumVol 294536.000 VentChorVol 42773.000 3rd4th5thCSF 7453.000 CSFVol 2580.000, OptChiasmVol 176.000 MaskVol 2927526.000 1123 404 1459 2.429 0.531 0.100 0.035 17 1.6 BA1_exvivo 4038 1646 4165 2.310 0.351 0.068 0.013 27 2.2 BA2_exvivo 1457 601 897 2.105 0.331 0.075 0.016 6 1.0 BA3a_exvivo 2626 1074 1815 1.700 0.325 0.063 0.011 12 1.2 BA3b_exvivo 1618 532 2116 3.043 0.394 0.075 0.027 15 2.1 BA4a_exvivo 1586 615 1633 2.864 0.378 0.064 0.060 16 6.1 BA4p_exvivo 7366 2993 11459 3.037 0.534 0.083 0.020 60 5.8 BA6_exvivo 1191 519 1726 2.798 0.440 0.087 0.021 15 1.1 BA44_exvivo 1450 603 2248 2.777 0.418 0.100 0.024 22 1.5 BA45_exvivo 8671 3139 6845 2.077 0.484 0.087 0.033 98 12.6 V1_exvivo 8686 3077 6881 1.966 0.481 0.109 0.042 128 16.2 V2_exvivo 477 185 527 2.235 0.421 0.088 0.044 7 0.9 MT_exvivo 475 172 969 3.825 0.738 0.061 0.019 2 0.4 perirhinal_exvivo 346 136 651 3.585 0.676 0.081 0.023 3 0.4 entorhinal_exvivo Started at Sat May 22 07:59:20 UTC 2021 Ended at Sat May 22 08:09:04 UTC 2021 #@#%# recon-all-run-time-hours 0.162 recon-all -s sub-01 finished without error at Sat May 22 08:09:06 UTC 2021