Tue May 25 21:12:53 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05 /opt/freesurfer/bin/recon-all -autorecon-hemi rh -noparcstats -noparcstats2 -noparcstats3 -nohyporelabel -nobalabels -openmp 8 -subjid sub-05 -sd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer subjid sub-05 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a Linux blg4313.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse 67108864 kbytes vmemoryuse unlimited descriptors 51200 memorylocked unlimited maxproc 767933 maxlocks unlimited maxsignal 767933 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196638428 111603048 72259928 2007648 12775452 79941700 Swap: 0 0 0 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:53-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/25-21:12:54-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# Tessellate rh Tue May 25 21:12:56 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 1 found - 1 modified | TOTAL: 2 pass 2 (xy-): 0 found - 1 modified | TOTAL: 2 pass 1 (yz+): 1 found - 1 modified | TOTAL: 3 pass 2 (yz+): 0 found - 1 modified | TOTAL: 3 pass 1 (yz-): 1 found - 1 modified | TOTAL: 4 pass 2 (yz-): 0 found - 1 modified | TOTAL: 4 pass 1 (xz+): 0 found - 0 modified | TOTAL: 4 pass 1 (xz-): 1 found - 1 modified | TOTAL: 5 pass 2 (xz-): 0 found - 1 modified | TOTAL: 5 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 1 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 5 (out of 491155: 0.001018) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 50: 2042 vertices, 2180 faces slice 60: 8585 vertices, 8910 faces slice 70: 20028 vertices, 20527 faces slice 80: 34222 vertices, 34686 faces slice 90: 48547 vertices, 49009 faces slice 100: 62888 vertices, 63393 faces slice 110: 75933 vertices, 76356 faces slice 120: 90162 vertices, 90684 faces slice 130: 105929 vertices, 106464 faces slice 140: 120221 vertices, 120772 faces slice 150: 133474 vertices, 134008 faces slice 160: 147035 vertices, 147570 faces slice 170: 161066 vertices, 161643 faces slice 180: 173962 vertices, 174404 faces slice 190: 184338 vertices, 184726 faces slice 200: 193891 vertices, 194251 faces slice 210: 202316 vertices, 202656 faces slice 220: 210472 vertices, 210821 faces slice 230: 216369 vertices, 216676 faces slice 240: 220484 vertices, 220679 faces slice 250: 221238 vertices, 221334 faces slice 260: 221238 vertices, 221334 faces slice 270: 221238 vertices, 221334 faces slice 280: 221238 vertices, 221334 faces slice 290: 221238 vertices, 221334 faces slice 300: 221238 vertices, 221334 faces slice 310: 221238 vertices, 221334 faces slice 320: 221238 vertices, 221334 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -0.80000 0.00000 0.00000 127.99999; 0.00000 0.00000 0.80000 -127.99999; 0.00000 -0.80000 0.00000 127.99999; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 221238 voxel in cpt #1: X=-96 [v=221238,e=664002,f=442668] located at (23.804480, -20.016680, 23.264330) For the whole surface: X=-96 [v=221238,e=664002,f=442668] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 rh Tue May 25 21:13:04 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Tue May 25 21:13:12 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_inflate -no-save-sulc -n 50 ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix niterations = 50 Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 46.7 mm, total surface area = 77433 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 1.8 minutes step 000: RMS=0.144 (target=0.015) step 005: RMS=0.111 (target=0.015) step 010: RMS=0.085 (target=0.015) step 015: RMS=0.071 (target=0.015) step 020: RMS=0.062 (target=0.015) step 025: RMS=0.056 (target=0.015) step 030: RMS=0.051 (target=0.015) step 035: RMS=0.047 (target=0.015) step 040: RMS=0.044 (target=0.015) step 045: RMS=0.042 (target=0.015) step 050: RMS=0.041 (target=0.015) step 055: RMS=0.038 (target=0.015) step 060: RMS=0.037 (target=0.015) step 065: RMS=0.036 (target=0.015) step 070: RMS=0.036 (target=0.015) step 075: RMS=0.035 (target=0.015) step 080: RMS=0.035 (target=0.015) step 085: RMS=0.034 (target=0.015) step 090: RMS=0.034 (target=0.015) step 095: RMS=0.034 (target=0.015) step 100: RMS=0.033 (target=0.015) step 105: RMS=0.033 (target=0.015) step 110: RMS=0.033 (target=0.015) step 115: RMS=0.033 (target=0.015) step 120: RMS=0.033 (target=0.015) step 125: RMS=0.033 (target=0.015) step 130: RMS=0.032 (target=0.015) step 135: RMS=0.032 (target=0.015) step 140: RMS=0.032 (target=0.015) step 145: RMS=0.032 (target=0.015) step 150: RMS=0.032 (target=0.015) step 155: RMS=0.032 (target=0.015) step 160: RMS=0.032 (target=0.015) step 165: RMS=0.032 (target=0.015) step 170: RMS=0.032 (target=0.015) step 175: RMS=0.032 (target=0.015) step 180: RMS=0.032 (target=0.015) step 185: RMS=0.032 (target=0.015) step 190: RMS=0.032 (target=0.015) step 195: RMS=0.032 (target=0.015) step 200: RMS=0.032 (target=0.015) step 205: RMS=0.032 (target=0.015) step 210: RMS=0.032 (target=0.015) step 215: RMS=0.032 (target=0.015) step 220: RMS=0.032 (target=0.015) step 225: RMS=0.032 (target=0.015) step 230: RMS=0.031 (target=0.015) step 235: RMS=0.031 (target=0.015) step 240: RMS=0.031 (target=0.015) step 245: RMS=0.031 (target=0.015) step 250: RMS=0.031 (target=0.015) step 255: RMS=0.032 (target=0.015) step 260: RMS=0.032 (target=0.015) step 265: RMS=0.032 (target=0.015) step 270: RMS=0.032 (target=0.015) step 275: RMS=0.032 (target=0.015) step 280: RMS=0.032 (target=0.015) step 285: RMS=0.032 (target=0.015) step 290: RMS=0.032 (target=0.015) step 295: RMS=0.032 (target=0.015) step 300: RMS=0.032 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 511.660862 mris_inflate stimesec 8.706890 mris_inflate ru_maxrss 353820 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 5602316 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 15568 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 86409 mris_inflate ru_nivcsw 2150 #-------------------------------------------- #@# QSphere rh Tue May 25 21:15:00 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.77 +- 0.43 (0.00-->5.45) (max @ vno 167889 --> 169237) face area 0.02 +- 0.02 (-0.07-->0.51) == Number of threads available to mris_sphere for OpenMP = 8 == scaling brain by 0.307... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=174.980, avgs=0 005/300: dt: 0.9000, rms radial error=174.722, avgs=0 010/300: dt: 0.9000, rms radial error=174.166, avgs=0 015/300: dt: 0.9000, rms radial error=173.436, avgs=0 020/300: dt: 0.9000, rms radial error=172.604, avgs=0 025/300: dt: 0.9000, rms radial error=171.714, avgs=0 030/300: dt: 0.9000, rms radial error=170.793, avgs=0 035/300: dt: 0.9000, rms radial error=169.857, avgs=0 040/300: dt: 0.9000, rms radial error=168.913, avgs=0 045/300: dt: 0.9000, rms radial error=167.967, avgs=0 050/300: dt: 0.9000, rms radial error=167.022, avgs=0 055/300: dt: 0.9000, rms radial error=166.080, avgs=0 060/300: dt: 0.9000, rms radial error=165.141, avgs=0 065/300: dt: 0.9000, rms radial error=164.208, avgs=0 070/300: dt: 0.9000, rms radial error=163.279, avgs=0 075/300: dt: 0.9000, rms radial error=162.355, avgs=0 080/300: dt: 0.9000, rms radial error=161.437, avgs=0 085/300: dt: 0.9000, rms radial error=160.523, avgs=0 090/300: dt: 0.9000, rms radial error=159.615, avgs=0 095/300: dt: 0.9000, rms radial error=158.713, avgs=0 100/300: dt: 0.9000, rms radial error=157.816, avgs=0 105/300: dt: 0.9000, rms radial error=156.924, avgs=0 110/300: dt: 0.9000, rms radial error=156.038, avgs=0 115/300: dt: 0.9000, rms radial error=155.156, avgs=0 120/300: dt: 0.9000, rms radial error=154.279, avgs=0 125/300: dt: 0.9000, rms radial error=153.407, avgs=0 130/300: dt: 0.9000, rms radial error=152.540, avgs=0 135/300: dt: 0.9000, rms radial error=151.678, avgs=0 140/300: dt: 0.9000, rms radial error=150.820, avgs=0 145/300: dt: 0.9000, rms radial error=149.968, avgs=0 150/300: dt: 0.9000, rms radial error=149.120, avgs=0 155/300: dt: 0.9000, rms radial error=148.277, avgs=0 160/300: dt: 0.9000, rms radial error=147.439, avgs=0 165/300: dt: 0.9000, rms radial error=146.606, avgs=0 170/300: dt: 0.9000, rms radial error=145.777, avgs=0 175/300: dt: 0.9000, rms radial error=144.953, avgs=0 180/300: dt: 0.9000, rms radial error=144.133, avgs=0 185/300: dt: 0.9000, rms radial error=143.319, avgs=0 190/300: dt: 0.9000, rms radial error=142.508, avgs=0 195/300: dt: 0.9000, rms radial error=141.703, avgs=0 200/300: dt: 0.9000, rms radial error=140.902, avgs=0 205/300: dt: 0.9000, rms radial error=140.105, avgs=0 210/300: dt: 0.9000, rms radial error=139.313, avgs=0 215/300: dt: 0.9000, rms radial error=138.525, avgs=0 220/300: dt: 0.9000, rms radial error=137.742, avgs=0 225/300: dt: 0.9000, rms radial error=136.963, avgs=0 230/300: dt: 0.9000, rms radial error=136.189, avgs=0 235/300: dt: 0.9000, rms radial error=135.419, avgs=0 240/300: dt: 0.9000, rms radial error=134.654, avgs=0 245/300: dt: 0.9000, rms radial error=133.892, avgs=0 250/300: dt: 0.9000, rms radial error=133.135, avgs=0 255/300: dt: 0.9000, rms radial error=132.383, avgs=0 260/300: dt: 0.9000, rms radial error=131.634, avgs=0 265/300: dt: 0.9000, rms radial error=130.890, avgs=0 270/300: dt: 0.9000, rms radial error=130.150, avgs=0 275/300: dt: 0.9000, rms radial error=129.414, avgs=0 280/300: dt: 0.9000, rms radial error=128.683, avgs=0 285/300: dt: 0.9000, rms radial error=127.955, avgs=0 290/300: dt: 0.9000, rms radial error=127.232, avgs=0 295/300: dt: 0.9000, rms radial error=126.513, avgs=0 300/300: dt: 0.9000, rms radial error=125.798, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 27376.18 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00011 epoch 2 (K=40.0), pass 1, starting sse = 5084.15 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = -0.00/10 = -0.00000 epoch 3 (K=160.0), pass 1, starting sse = 617.19 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.05/11 = 0.00467 epoch 4 (K=640.0), pass 1, starting sse = 45.11 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.15/13 = 0.01135 final distance error %25.10 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.05 hours mris_sphere utimesec 651.018892 mris_sphere stimesec 8.699473 mris_sphere ru_maxrss 353872 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 5315565 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 15568 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 125330 mris_sphere ru_nivcsw 2349 FSRUNTIME@ mris_sphere 0.0457 hours 1 threads #-------------------------------------------- #@# Fix Topology Copy rh Tue May 25 21:17:45 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology rh Tue May 25 21:17:45 UTC 2021 mris_fix_topology -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/touch/rusage.mris_fix_topology.rh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 sub-05 rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-96 (nv=221238, nf=442668, ne=664002, g=49) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 8 iterations marking ambiguous vertices... 4975 ambiguous faces found in tessellation segmenting defects... 80 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 30 into 25 -merging segment 33 into 34 -merging segment 44 into 43 -merging segment 78 into 72 76 defects to be corrected 0 vertices coincident reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -9.2491 (-4.6245) -vertex loglikelihood: -5.9480 (-2.9740) -normal dot loglikelihood: -3.4884 (-3.4884) -quad curv loglikelihood: -6.3869 (-3.1934) Total Loglikelihood : -25.0724 CORRECTING DEFECT 0 (vertices=22, convex hull=58, v0=1384) After retessellation of defect 0 (v0=1384), euler #=-74 (218001,652381,434306) : difference with theory (-73) = 1 CORRECTING DEFECT 1 (vertices=82, convex hull=40, v0=1925) After retessellation of defect 1 (v0=1925), euler #=-73 (218004,652409,434332) : difference with theory (-72) = 1 CORRECTING DEFECT 2 (vertices=35, convex hull=75, v0=4244) After retessellation of defect 2 (v0=4244), euler #=-72 (218012,652464,434380) : difference with theory (-71) = 1 CORRECTING DEFECT 3 (vertices=37, convex hull=75, v0=13794) After retessellation of defect 3 (v0=13794), euler #=-71 (218019,652517,434427) : difference with theory (-70) = 1 CORRECTING DEFECT 4 (vertices=9, convex hull=22, v0=19352) After retessellation of defect 4 (v0=19352), euler #=-70 (218020,652524,434434) : difference with theory (-69) = 1 CORRECTING DEFECT 5 (vertices=15, convex hull=16, v0=20941) After retessellation of defect 5 (v0=20941), euler #=-69 (218020,652528,434439) : difference with theory (-68) = 1 CORRECTING DEFECT 6 (vertices=11, convex hull=16, v0=21565) After retessellation of defect 6 (v0=21565), euler #=-68 (218021,652534,434445) : difference with theory (-67) = 1 CORRECTING DEFECT 7 (vertices=18, convex hull=20, v0=22149) After retessellation of defect 7 (v0=22149), euler #=-67 (218022,652544,434455) : difference with theory (-66) = 1 CORRECTING DEFECT 8 (vertices=17, convex hull=49, v0=24681) After retessellation of defect 8 (v0=24681), euler #=-66 (218028,652578,434484) : difference with theory (-65) = 1 CORRECTING DEFECT 9 (vertices=17, convex hull=55, v0=30765) After retessellation of defect 9 (v0=30765), euler #=-65 (218033,652611,434513) : difference with theory (-64) = 1 CORRECTING DEFECT 10 (vertices=6, convex hull=23, v0=32653) After retessellation of defect 10 (v0=32653), euler #=-64 (218034,652621,434523) : difference with theory (-63) = 1 CORRECTING DEFECT 11 (vertices=57, convex hull=100, v0=35581) After retessellation of defect 11 (v0=35581), euler #=-63 (218046,652699,434590) : difference with theory (-62) = 1 CORRECTING DEFECT 12 (vertices=34, convex hull=22, v0=39565) After retessellation of defect 12 (v0=39565), euler #=-62 (218048,652713,434603) : difference with theory (-61) = 1 CORRECTING DEFECT 13 (vertices=29, convex hull=21, v0=41695) After retessellation of defect 13 (v0=41695), euler #=-61 (218050,652724,434613) : difference with theory (-60) = 1 CORRECTING DEFECT 14 (vertices=36, convex hull=47, v0=42391) After retessellation of defect 14 (v0=42391), euler #=-60 (218055,652755,434640) : difference with theory (-59) = 1 CORRECTING DEFECT 15 (vertices=58, convex hull=76, v0=43808) After retessellation of defect 15 (v0=43808), euler #=-59 (218064,652818,434695) : difference with theory (-58) = 1 CORRECTING DEFECT 16 (vertices=24, convex hull=57, v0=45302) After retessellation of defect 16 (v0=45302), euler #=-58 (218068,652848,434722) : difference with theory (-57) = 1 CORRECTING DEFECT 17 (vertices=49, convex hull=30, v0=58547) After retessellation of defect 17 (v0=58547), euler #=-57 (218071,652867,434739) : difference with theory (-56) = 1 CORRECTING DEFECT 18 (vertices=44, convex hull=117, v0=66625) After retessellation of defect 18 (v0=66625), euler #=-56 (218083,652954,434815) : difference with theory (-55) = 1 CORRECTING DEFECT 19 (vertices=46, convex hull=48, v0=88730) After retessellation of defect 19 (v0=88730), euler #=-55 (218089,652990,434846) : difference with theory (-54) = 1 CORRECTING DEFECT 20 (vertices=27, convex hull=60, v0=89246) After retessellation of defect 20 (v0=89246), euler #=-54 (218098,653039,434887) : difference with theory (-53) = 1 CORRECTING DEFECT 21 (vertices=45, convex hull=73, v0=91952) After retessellation of defect 21 (v0=91952), euler #=-53 (218107,653096,434936) : difference with theory (-52) = 1 CORRECTING DEFECT 22 (vertices=11, convex hull=22, v0=94614) After retessellation of defect 22 (v0=94614), euler #=-52 (218107,653102,434943) : difference with theory (-51) = 1 CORRECTING DEFECT 23 (vertices=6, convex hull=24, v0=99393) After retessellation of defect 23 (v0=99393), euler #=-51 (218107,653109,434951) : difference with theory (-50) = 1 CORRECTING DEFECT 24 (vertices=22, convex hull=43, v0=101717) After retessellation of defect 24 (v0=101717), euler #=-50 (218113,653143,434980) : difference with theory (-49) = 1 CORRECTING DEFECT 25 (vertices=115, convex hull=111, v0=104198) After retessellation of defect 25 (v0=104198), euler #=-48 (218138,653268,435082) : difference with theory (-48) = 0 CORRECTING DEFECT 26 (vertices=32, convex hull=60, v0=104873) After retessellation of defect 26 (v0=104873), euler #=-47 (218146,653316,435123) : difference with theory (-47) = 0 CORRECTING DEFECT 27 (vertices=37, convex hull=31, v0=108487) After retessellation of defect 27 (v0=108487), euler #=-46 (218149,653339,435144) : difference with theory (-46) = 0 CORRECTING DEFECT 28 (vertices=13, convex hull=37, v0=109615) After retessellation of defect 28 (v0=109615), euler #=-45 (218154,653367,435168) : difference with theory (-45) = 0 CORRECTING DEFECT 29 (vertices=31, convex hull=68, v0=110259) After retessellation of defect 29 (v0=110259), euler #=-44 (218162,653415,435209) : difference with theory (-44) = 0 CORRECTING DEFECT 30 (vertices=5, convex hull=31, v0=113869) After retessellation of defect 30 (v0=113869), euler #=-43 (218163,653427,435221) : difference with theory (-43) = 0 CORRECTING DEFECT 31 (vertices=18, convex hull=33, v0=126955) After retessellation of defect 31 (v0=126955), euler #=-42 (218164,653440,435234) : difference with theory (-42) = 0 CORRECTING DEFECT 32 (vertices=113, convex hull=141, v0=131152) After retessellation of defect 32 (v0=131152), euler #=-40 (218185,653566,435341) : difference with theory (-41) = -1 CORRECTING DEFECT 33 (vertices=34, convex hull=84, v0=131536) After retessellation of defect 33 (v0=131536), euler #=-39 (218194,653630,435397) : difference with theory (-40) = -1 CORRECTING DEFECT 34 (vertices=91, convex hull=67, v0=131589) After retessellation of defect 34 (v0=131589), euler #=-38 (218208,653697,435451) : difference with theory (-39) = -1 CORRECTING DEFECT 35 (vertices=7, convex hull=16, v0=135499) After retessellation of defect 35 (v0=135499), euler #=-37 (218210,653707,435460) : difference with theory (-38) = -1 CORRECTING DEFECT 36 (vertices=7, convex hull=32, v0=141375) After retessellation of defect 36 (v0=141375), euler #=-36 (218212,653722,435474) : difference with theory (-37) = -1 CORRECTING DEFECT 37 (vertices=40, convex hull=69, v0=142996) After retessellation of defect 37 (v0=142996), euler #=-35 (218226,653792,435531) : difference with theory (-36) = -1 CORRECTING DEFECT 38 (vertices=14, convex hull=51, v0=145055) After retessellation of defect 38 (v0=145055), euler #=-34 (218228,653814,435552) : difference with theory (-35) = -1 CORRECTING DEFECT 39 (vertices=13, convex hull=18, v0=147565) After retessellation of defect 39 (v0=147565), euler #=-33 (218229,653825,435563) : difference with theory (-34) = -1 CORRECTING DEFECT 40 (vertices=14, convex hull=23, v0=148866) After retessellation of defect 40 (v0=148866), euler #=-32 (218232,653841,435577) : difference with theory (-33) = -1 CORRECTING DEFECT 41 (vertices=250, convex hull=218, v0=150731) After retessellation of defect 41 (v0=150731), euler #=-31 (218286,654127,435810) : difference with theory (-32) = -1 CORRECTING DEFECT 42 (vertices=20, convex hull=27, v0=152401) After retessellation of defect 42 (v0=152401), euler #=-30 (218288,654140,435822) : difference with theory (-31) = -1 CORRECTING DEFECT 43 (vertices=182, convex hull=94, v0=153087) After retessellation of defect 43 (v0=153087), euler #=-30 (218299,654221,435892) : difference with theory (-30) = 0 CORRECTING DEFECT 44 (vertices=46, convex hull=27, v0=153282) After retessellation of defect 44 (v0=153282), euler #=-29 (218302,654243,435912) : difference with theory (-29) = 0 CORRECTING DEFECT 45 (vertices=20, convex hull=28, v0=154171) After retessellation of defect 45 (v0=154171), euler #=-28 (218303,654253,435922) : difference with theory (-28) = 0 CORRECTING DEFECT 46 (vertices=9, convex hull=23, v0=156663) After retessellation of defect 46 (v0=156663), euler #=-27 (218304,654267,435936) : difference with theory (-27) = 0 CORRECTING DEFECT 47 (vertices=72, convex hull=36, v0=157496) After retessellation of defect 47 (v0=157496), euler #=-26 (218309,654295,435960) : difference with theory (-26) = 0 CORRECTING DEFECT 48 (vertices=20, convex hull=21, v0=157587) After retessellation of defect 48 (v0=157587), euler #=-25 (218312,654310,435973) : difference with theory (-25) = 0 CORRECTING DEFECT 49 (vertices=132, convex hull=84, v0=159297) After retessellation of defect 49 (v0=159297), euler #=-25 (218328,654395,436042) : difference with theory (-24) = 1 CORRECTING DEFECT 50 (vertices=22, convex hull=36, v0=160246) After retessellation of defect 50 (v0=160246), euler #=-24 (218330,654412,436058) : difference with theory (-23) = 1 CORRECTING DEFECT 51 (vertices=33, convex hull=25, v0=162085) After retessellation of defect 51 (v0=162085), euler #=-23 (218336,654435,436076) : difference with theory (-22) = 1 CORRECTING DEFECT 52 (vertices=35, convex hull=74, v0=162289) After retessellation of defect 52 (v0=162289), euler #=-22 (218344,654490,436124) : difference with theory (-21) = 1 CORRECTING DEFECT 53 (vertices=19, convex hull=31, v0=163721) After retessellation of defect 53 (v0=163721), euler #=-21 (218349,654520,436150) : difference with theory (-20) = 1 CORRECTING DEFECT 54 (vertices=34, convex hull=62, v0=169350) After retessellation of defect 54 (v0=169350), euler #=-20 (218360,654578,436198) : difference with theory (-19) = 1 CORRECTING DEFECT 55 (vertices=71, convex hull=70, v0=174693) After retessellation of defect 55 (v0=174693), euler #=-19 (218369,654639,436251) : difference with theory (-18) = 1 CORRECTING DEFECT 56 (vertices=27, convex hull=78, v0=176618) After retessellation of defect 56 (v0=176618), euler #=-18 (218378,654705,436309) : difference with theory (-17) = 1 CORRECTING DEFECT 57 (vertices=43, convex hull=17, v0=177151) After retessellation of defect 57 (v0=177151), euler #=-17 (218379,654714,436318) : difference with theory (-16) = 1 CORRECTING DEFECT 58 (vertices=6, convex hull=31, v0=177816) After retessellation of defect 58 (v0=177816), euler #=-16 (218379,654722,436327) : difference with theory (-15) = 1 CORRECTING DEFECT 59 (vertices=5, convex hull=15, v0=178238) After retessellation of defect 59 (v0=178238), euler #=-15 (218381,654731,436335) : difference with theory (-14) = 1 CORRECTING DEFECT 60 (vertices=99, convex hull=49, v0=180429) After retessellation of defect 60 (v0=180429), euler #=-14 (218392,654785,436379) : difference with theory (-13) = 1 CORRECTING DEFECT 61 (vertices=83, convex hull=41, v0=186607) After retessellation of defect 61 (v0=186607), euler #=-13 (218404,654836,436419) : difference with theory (-12) = 1 CORRECTING DEFECT 62 (vertices=13, convex hull=29, v0=186778) After retessellation of defect 62 (v0=186778), euler #=-12 (218407,654854,436435) : difference with theory (-11) = 1 CORRECTING DEFECT 63 (vertices=23, convex hull=61, v0=188228) After retessellation of defect 63 (v0=188228), euler #=-11 (218414,654897,436472) : difference with theory (-10) = 1 CORRECTING DEFECT 64 (vertices=36, convex hull=84, v0=194717) After retessellation of defect 64 (v0=194717), euler #=-10 (218424,654963,436529) : difference with theory (-9) = 1 CORRECTING DEFECT 65 (vertices=5, convex hull=24, v0=194766) After retessellation of defect 65 (v0=194766), euler #=-9 (218424,654970,436537) : difference with theory (-8) = 1 CORRECTING DEFECT 66 (vertices=29, convex hull=73, v0=200811) After retessellation of defect 66 (v0=200811), euler #=-8 (218433,655029,436588) : difference with theory (-7) = 1 CORRECTING DEFECT 67 (vertices=56, convex hull=48, v0=203054) After retessellation of defect 67 (v0=203054), euler #=-7 (218441,655073,436625) : difference with theory (-6) = 1 CORRECTING DEFECT 68 (vertices=21, convex hull=61, v0=204672) After retessellation of defect 68 (v0=204672), euler #=-6 (218446,655109,436657) : difference with theory (-5) = 1 CORRECTING DEFECT 69 (vertices=359, convex hull=225, v0=212361) After retessellation of defect 69 (v0=212361), euler #=-4 (218473,655307,436830) : difference with theory (-4) = 0 CORRECTING DEFECT 70 (vertices=7, convex hull=23, v0=212933) After retessellation of defect 70 (v0=212933), euler #=-3 (218474,655318,436841) : difference with theory (-3) = 0 CORRECTING DEFECT 71 (vertices=25, convex hull=60, v0=214409) After retessellation of defect 71 (v0=214409), euler #=-2 (218480,655357,436875) : difference with theory (-2) = 0 CORRECTING DEFECT 72 (vertices=43, convex hull=76, v0=214604) After retessellation of defect 72 (v0=214604), euler #=-1 (218489,655413,436923) : difference with theory (-1) = 0 CORRECTING DEFECT 73 (vertices=5, convex hull=16, v0=216382) After retessellation of defect 73 (v0=216382), euler #=0 (218489,655416,436927) : difference with theory (0) = 0 CORRECTING DEFECT 74 (vertices=24, convex hull=55, v0=216436) After retessellation of defect 74 (v0=216436), euler #=1 (218493,655449,436957) : difference with theory (1) = 0 CORRECTING DEFECT 75 (vertices=27, convex hull=65, v0=218606) After retessellation of defect 75 (v0=218606), euler #=2 (218501,655497,436998) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.71 +- 0.18 (0.03-->8.38) (max @ vno 209612 --> 215085) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.71 +- 0.18 (0.03-->8.38) (max @ vno 209612 --> 215085) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 232 mutations (38.7%), 367 crossovers (61.3%), 41 vertices were eliminated building final representation... 2737 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=218501, nf=436998, ne=655497, g=0) writing corrected surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.orig... defective orientation at vertex 160423(160424) with faces 320814 and 436033 defective orientation at vertex 160423(161869) with faces 320813 and 435994 defective orientation at vertex 160424(160423) with faces 320814 and 436033 defective orientation at vertex 160424(161870) with faces 320814 and 436026 defective orientation at vertex 161869(160423) with faces 320813 and 435994 defective orientation at vertex 161869(161870) with faces 320813 and 435974 defective orientation at vertex 161870(161869) with faces 320813 and 435974 defective orientation at vertex 161870(160424) with faces 320814 and 436026 0.004 % of the vertices (8 vertices) exhibit an orientation change topology fixing took 35.7 minutes 0 defective edges removing intersecting faces 000: 307 intersecting 001: 19 intersecting 002: 9 intersecting mris_fix_topology utimesec 2153.937372 mris_fix_topology stimesec 4.905397 mris_fix_topology ru_maxrss 722648 mris_fix_topology ru_ixrss 0 mris_fix_topology ru_idrss 0 mris_fix_topology ru_isrss 0 mris_fix_topology ru_minflt 4141596 mris_fix_topology ru_majflt 0 mris_fix_topology ru_nswap 0 mris_fix_topology ru_inblock 0 mris_fix_topology ru_oublock 20576 mris_fix_topology ru_msgsnd 0 mris_fix_topology ru_msgrcv 0 mris_fix_topology ru_nsignals 0 mris_fix_topology ru_nvcsw 26752 mris_fix_topology ru_nivcsw 2452 FSRUNTIME@ mris_fix_topology rh 0.5947 hours 1 threads mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 218501 - 655497 + 436998 = 2 --> 0 holes F =2V-4: 436998 = 437002-4 (0) 2E=3F: 1310994 = 1310994 (0) total defect index = 0 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 41 intersecting 001: 5 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf rh Tue May 25 21:53:35 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_make_surfaces -aseg ../mri/aseg.presurf -white white.preaparc -noaparc -whiteonly -mgz -T1 brain.finalsurfs sub-05 rh using white.preaparc as white matter name... only generating white matter surface using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/filled.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/brain.finalsurfs.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/../mri/aseg.presurf.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... 43249 bright wm thresholded. 3 bright non-wm voxels segmented. reading original surface position from /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.orig... computing class statistics... border white: 444408 voxels (1.36%) border gray 456912 voxels (1.39%) WM (103.0): 102.4 +- 6.3 [70.0 --> 110.0] GM (83.0) : 81.8 +- 10.0 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 67.0 (was 70) setting MAX_BORDER_WHITE to 114.3 (was 105) setting MIN_BORDER_WHITE to 77.0 (was 85) setting MAX_CSF to 57.0 (was 40) setting MAX_GRAY to 101.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 67.0 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.0 (was 40) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.67 +- 0.17 (0.02-->3.35) (max @ vno 215085 --> 215532) face area 0.18 +- 0.08 (0.00-->1.15) mean absolute distance = 1.46 +- 1.54 7117 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... spring scale = 1.25 using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=108+-3.5, GM=77+-8.7 mean inside = 100.5, mean outside = 83.5 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=95.6, 127 (127) missing vertices, mean dist -0.7 [2.1 (%51.5)->0.6 (%48.5))] %44 local maxima, %40 large gradients and %11 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=blg43, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.71 +- 0.19 (0.02-->3.29) (max @ vno 215085 --> 215532) face area 0.18 +- 0.08 (0.00-->1.63) mean absolute distance = 0.60 +- 0.80 7428 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=4712180.0, rms=9.462 001: dt: 0.5000, sse=2300442.8, rms=5.772 (38.996%) 002: dt: 0.5000, sse=1482483.5, rms=3.615 (37.379%) 003: dt: 0.5000, sse=1307066.1, rms=2.962 (18.051%) 004: dt: 0.5000, sse=1267254.2, rms=2.825 (4.638%) rms = 2.79, time step reduction 1 of 3 to 0.250... 005: dt: 0.5000, sse=1248012.1, rms=2.785 (1.404%) 006: dt: 0.2500, sse=1045871.4, rms=1.630 (41.480%) 007: dt: 0.2500, sse=1015271.3, rms=1.332 (18.258%) 008: dt: 0.2500, sse=1005550.4, rms=1.253 (5.929%) rms = 1.21, time step reduction 2 of 3 to 0.125... 009: dt: 0.2500, sse=997230.1, rms=1.208 (3.639%) rms = 1.18, time step reduction 3 of 3 to 0.062... 010: dt: 0.1250, sse=987916.8, rms=1.176 (2.617%) positioning took 1.3 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 3 vertex label from ripped group mean border=94.7, 173 (37) missing vertices, mean dist -0.1 [0.9 (%39.0)->0.3 (%61.0))] %80 local maxima, %12 large gradients and % 3 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=blg43, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.70 +- 0.19 (0.02-->3.91) (max @ vno 151833 --> 151834) face area 0.21 +- 0.09 (0.00-->2.53) mean absolute distance = 0.34 +- 0.57 8761 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1845742.6, rms=4.364 011: dt: 0.5000, sse=1380232.0, rms=2.718 (37.731%) 012: dt: 0.5000, sse=1332083.9, rms=2.597 (4.439%) rms = 2.78, time step reduction 1 of 3 to 0.250... 013: dt: 0.2500, sse=1159713.8, rms=1.692 (34.844%) 014: dt: 0.2500, sse=1122728.2, rms=1.193 (29.520%) 015: dt: 0.2500, sse=1096904.1, rms=1.071 (10.229%) rms = 1.02, time step reduction 2 of 3 to 0.125... 016: dt: 0.2500, sse=1107147.1, rms=1.021 (4.601%) rms = 0.99, time step reduction 3 of 3 to 0.062... 017: dt: 0.1250, sse=1085479.9, rms=0.985 (3.557%) positioning took 1.0 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=94.7, 190 (23) missing vertices, mean dist -0.1 [0.6 (%38.2)->0.2 (%61.8))] %89 local maxima, % 4 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=blg43, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.70 +- 0.18 (0.03-->3.18) (max @ vno 109114 --> 110560) face area 0.20 +- 0.09 (0.00-->2.46) mean absolute distance = 0.25 +- 0.44 6748 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1241556.6, rms=2.334 018: dt: 0.5000, sse=1197093.9, rms=1.985 (14.947%) rms = 2.31, time step reduction 1 of 3 to 0.250... 019: dt: 0.2500, sse=1078115.1, rms=1.315 (33.745%) 020: dt: 0.2500, sse=1073632.8, rms=1.030 (21.662%) 021: dt: 0.2500, sse=1053571.2, rms=0.976 (5.293%) rms = 0.95, time step reduction 2 of 3 to 0.125... 022: dt: 0.2500, sse=1059186.6, rms=0.952 (2.413%) rms = 0.92, time step reduction 3 of 3 to 0.062... 023: dt: 0.1250, sse=1060538.5, rms=0.921 (3.228%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 3 vertex label from ripped group mean border=94.5, 208 (14) missing vertices, mean dist -0.0 [0.4 (%33.7)->0.2 (%66.3))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=blg43, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white.preaparc... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=1124420.4, rms=1.548 024: dt: 0.5000, sse=1112303.8, rms=1.410 (8.887%) rms = 1.90, time step reduction 1 of 3 to 0.250... 025: dt: 0.2500, sse=1037237.8, rms=0.919 (34.838%) 026: dt: 0.2500, sse=1049606.5, rms=0.810 (11.823%) rms = 0.77, time step reduction 2 of 3 to 0.125... 027: dt: 0.2500, sse=1036455.4, rms=0.770 (5.026%) rms = 0.75, time step reduction 3 of 3 to 0.062... 028: dt: 0.1250, sse=1022043.2, rms=0.746 (3.089%) positioning took 0.7 minutes generating cortex label... 22 non-cortical segments detected only using segment with 11394 vertices erasing segment 1 (vno[0] = 151910) erasing segment 2 (vno[0] = 154463) erasing segment 3 (vno[0] = 154465) erasing segment 4 (vno[0] = 154633) erasing segment 5 (vno[0] = 155989) erasing segment 6 (vno[0] = 157284) erasing segment 7 (vno[0] = 157331) erasing segment 8 (vno[0] = 158676) erasing segment 9 (vno[0] = 158836) erasing segment 10 (vno[0] = 158869) erasing segment 11 (vno[0] = 160190) erasing segment 12 (vno[0] = 160252) erasing segment 13 (vno[0] = 160298) erasing segment 14 (vno[0] = 162970) erasing segment 15 (vno[0] = 163033) erasing segment 16 (vno[0] = 163123) erasing segment 17 (vno[0] = 164297) erasing segment 18 (vno[0] = 168180) erasing segment 19 (vno[0] = 169350) erasing segment 20 (vno[0] = 172441) erasing segment 21 (vno[0] = 218254) writing cortex label to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label... writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.curv writing smoothed area to rh.area writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.area vertex spacing 0.70 +- 0.19 (0.03-->3.91) (max @ vno 151833 --> 151834) face area 0.20 +- 0.09 (0.00-->2.45) refinement took 5.7 minutes #-------------------------------------------- #@# Smooth2 rh Tue May 25 21:59:17 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white.preaparc ../surf/rh.smoothwm smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Tue May 25 21:59:25 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_inflate -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/touch/rusage.mris_inflate.rh.dat -n 50 ../surf/rh.smoothwm ../surf/rh.inflated niterations = 50 Reading ../surf/rh.smoothwm avg radius = 46.7 mm, total surface area = 82407 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.157 (target=0.015) step 005: RMS=0.112 (target=0.015) step 010: RMS=0.084 (target=0.015) step 015: RMS=0.070 (target=0.015) step 020: RMS=0.059 (target=0.015) step 025: RMS=0.051 (target=0.015) step 030: RMS=0.043 (target=0.015) step 035: RMS=0.038 (target=0.015) step 040: RMS=0.033 (target=0.015) step 045: RMS=0.029 (target=0.015) step 050: RMS=0.027 (target=0.015) step 055: RMS=0.025 (target=0.015) step 060: RMS=0.023 (target=0.015) step 065: RMS=0.022 (target=0.015) step 070: RMS=0.021 (target=0.015) step 075: RMS=0.019 (target=0.015) step 080: RMS=0.019 (target=0.015) step 085: RMS=0.019 (target=0.015) step 090: RMS=0.018 (target=0.015) step 095: RMS=0.017 (target=0.015) step 100: RMS=0.017 (target=0.015) step 105: RMS=0.017 (target=0.015) step 110: RMS=0.017 (target=0.015) step 115: RMS=0.017 (target=0.015) step 120: RMS=0.016 (target=0.015) step 125: RMS=0.016 (target=0.015) step 130: RMS=0.016 (target=0.015) step 135: RMS=0.016 (target=0.015) step 140: RMS=0.015 (target=0.015) step 145: RMS=0.015 (target=0.015) step 150: RMS=0.015 (target=0.015) inflation complete. inflation took 1.2 minutes mris_inflate utimesec 375.550044 mris_inflate stimesec 10.094169 mris_inflate ru_maxrss 349484 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 3187235 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 17080 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 139493 mris_inflate ru_nivcsw 1280 #-------------------------------------------- #@# Curv .H and .K rh Tue May 25 22:00:37 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf mris_curvature -w rh.white.preaparc total integrated curvature = 42.885*4pi (538.907) --> -42 handles ICI = 264.8, FI = 2663.3, variation=41595.773 writing Gaussian curvature to ./rh.white.preaparc.K...done. writing mean curvature to ./rh.white.preaparc.H...done. rm -f rh.white.H ln -s rh.white.preaparc.H rh.white.H rm -f rh.white.K ln -s rh.white.preaparc.K rh.white.K mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 343 vertices thresholded to be in k1 ~ [-0.14 0.90], k2 ~ [-0.11 0.05] total integrated curvature = 0.722*4pi (9.071) --> 0 handles ICI = 1.3, FI = 5.1, variation=96.503 221 vertices thresholded to be in [-0.01 0.01] writing Gaussian curvature to ./rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 220 vertices thresholded to be in [-0.12 0.10] done. writing mean curvature to ./rh.inflated.H...curvature mean = -0.016, std = 0.017 done. #----------------------------------------- #@# Curvature Stats rh Tue May 25 22:02:14 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm sub-05 rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ sub-05/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 406 ] Gb_filter = 0 WARN: S lookup min: -0.258054 WARN: S explicit min: 0.000000 vertex = 981 #-------------------------------------------- #@# Sphere rh Tue May 25 22:02:20 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_sphere -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/touch/rusage.mris_sphere.rh.dat -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... == Number of threads available to mris_sphere for OpenMP = 8 == scaling brain by 0.291... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=blg43, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %38.43 pass 1: epoch 2 of 3 starting distance error %20.55 unfolding complete - removing small folds... starting distance error %20.38 removing remaining folds... final distance error %20.39 MRISunfold() return, current seed 1234 -01: dt=0.0000, 599 negative triangles 103: dt=0.9900, 599 negative triangles 104: dt=0.9900, 452 negative triangles 105: dt=0.9900, 433 negative triangles 106: dt=0.9900, 380 negative triangles 107: dt=0.9900, 368 negative triangles 108: dt=0.9900, 349 negative triangles 109: dt=0.9900, 333 negative triangles 110: dt=0.9900, 331 negative triangles 111: dt=0.9900, 328 negative triangles 112: dt=0.9900, 320 negative triangles 113: dt=0.9900, 306 negative triangles 114: dt=0.9900, 302 negative triangles 115: dt=0.9900, 304 negative triangles 116: dt=0.9900, 287 negative triangles 117: dt=0.9900, 282 negative triangles 118: dt=0.9900, 279 negative triangles 119: dt=0.9900, 259 negative triangles 120: dt=0.9900, 271 negative triangles 121: dt=0.9900, 266 negative triangles 122: dt=0.9900, 259 negative triangles 123: dt=0.9900, 244 negative triangles 124: dt=0.9900, 253 negative triangles 125: dt=0.9900, 267 negative triangles 126: dt=0.9900, 242 negative triangles 127: dt=0.9900, 250 negative triangles 128: dt=0.9900, 244 negative triangles 129: dt=0.9900, 247 negative triangles 130: dt=0.9900, 232 negative triangles 131: dt=0.9900, 234 negative triangles 132: dt=0.9900, 222 negative triangles 133: dt=0.9900, 238 negative triangles 134: dt=0.9900, 237 negative triangles 135: dt=0.9900, 233 negative triangles 136: dt=0.9900, 233 negative triangles 137: dt=0.9900, 227 negative triangles 138: dt=0.9900, 228 negative triangles 139: dt=0.9900, 225 negative triangles 140: dt=0.9900, 225 negative triangles 141: dt=0.9900, 224 negative triangles 142: dt=0.9900, 205 negative triangles 143: dt=0.9900, 215 negative triangles 144: dt=0.9900, 208 negative triangles 145: dt=0.9900, 224 negative triangles 146: dt=0.9900, 217 negative triangles 147: dt=0.9900, 228 negative triangles 148: dt=0.9900, 212 negative triangles 149: dt=0.9900, 216 negative triangles 150: dt=0.9900, 219 negative triangles 151: dt=0.9900, 213 negative triangles 152: dt=0.9405, 206 negative triangles 153: dt=0.9405, 217 negative triangles 154: dt=0.9405, 211 negative triangles 155: dt=0.9405, 210 negative triangles 156: dt=0.9405, 197 negative triangles 157: dt=0.9405, 213 negative triangles 158: dt=0.9405, 210 negative triangles 159: dt=0.9405, 210 negative triangles 160: dt=0.9405, 217 negative triangles 161: dt=0.9405, 215 negative triangles 162: dt=0.9405, 210 negative triangles 163: dt=0.9405, 206 negative triangles 164: dt=0.9405, 210 negative triangles 165: dt=0.9405, 209 negative triangles 166: dt=0.9405, 196 negative triangles 167: dt=0.9405, 187 negative triangles 168: dt=0.9405, 194 negative triangles 169: dt=0.9405, 195 negative triangles 170: dt=0.9405, 198 negative triangles 171: dt=0.9405, 198 negative triangles 172: dt=0.9405, 200 negative triangles 173: dt=0.9405, 189 negative triangles 174: dt=0.9405, 197 negative triangles 175: dt=0.9405, 199 negative triangles 176: dt=0.9405, 194 negative triangles 177: dt=0.8935, 188 negative triangles 178: dt=0.8935, 190 negative triangles 179: dt=0.8935, 181 negative triangles 180: dt=0.8935, 179 negative triangles 181: dt=0.8935, 187 negative triangles 182: dt=0.8935, 169 negative triangles 183: dt=0.8935, 178 negative triangles 184: dt=0.8935, 178 negative triangles 185: dt=0.8935, 166 negative triangles 186: dt=0.8935, 167 negative triangles 187: dt=0.8935, 171 negative triangles 188: dt=0.8935, 172 negative triangles 189: dt=0.8935, 176 negative triangles 190: dt=0.8935, 164 negative triangles 191: dt=0.8935, 164 negative triangles 192: dt=0.8935, 165 negative triangles 193: dt=0.8935, 165 negative triangles 194: dt=0.8935, 161 negative triangles 195: dt=0.8935, 156 negative triangles 196: dt=0.8935, 155 negative triangles 197: dt=0.8935, 163 negative triangles 198: dt=0.8935, 148 negative triangles 199: dt=0.8935, 150 negative triangles 200: dt=0.8935, 151 negative triangles 201: dt=0.8935, 149 negative triangles 202: dt=0.8935, 149 negative triangles 203: dt=0.8935, 150 negative triangles 204: dt=0.8935, 146 negative triangles 205: dt=0.8935, 146 negative triangles 206: dt=0.8935, 147 negative triangles 207: dt=0.8935, 143 negative triangles 208: dt=0.8935, 147 negative triangles 209: dt=0.8935, 146 negative triangles 210: dt=0.8935, 145 negative triangles 211: dt=0.8935, 143 negative triangles 212: dt=0.8935, 145 negative triangles 213: dt=0.8935, 142 negative triangles 214: dt=0.8935, 140 negative triangles 215: dt=0.8935, 141 negative triangles 216: dt=0.8935, 138 negative triangles 217: dt=0.8935, 141 negative triangles 218: dt=0.8935, 138 negative triangles 219: dt=0.8935, 139 negative triangles 220: dt=0.8935, 139 negative triangles 221: dt=0.8935, 135 negative triangles 222: dt=0.8935, 141 negative triangles 223: dt=0.8935, 137 negative triangles 224: dt=0.8935, 139 negative triangles 225: dt=0.8935, 135 negative triangles 226: dt=0.8935, 127 negative triangles 227: dt=0.8935, 131 negative triangles 228: dt=0.8935, 134 negative triangles 229: dt=0.8935, 126 negative triangles 230: dt=0.8935, 141 negative triangles 231: dt=0.8935, 132 negative triangles 232: dt=0.8935, 128 negative triangles 233: dt=0.8935, 129 negative triangles 234: dt=0.8935, 132 negative triangles 235: dt=0.8935, 134 negative triangles 236: dt=0.8935, 129 negative triangles 237: dt=0.8935, 134 negative triangles 238: dt=0.8935, 137 negative triangles 239: dt=0.8935, 124 negative triangles 240: dt=0.8935, 122 negative triangles 241: dt=0.8935, 119 negative triangles 242: dt=0.8935, 120 negative triangles 243: dt=0.8935, 127 negative triangles 244: dt=0.8935, 129 negative triangles 245: dt=0.8935, 127 negative triangles 246: dt=0.8935, 122 negative triangles 247: dt=0.8935, 117 negative triangles 248: dt=0.8935, 113 negative triangles 249: dt=0.8935, 124 negative triangles 250: dt=0.8935, 123 negative triangles 251: dt=0.8935, 112 negative triangles 252: dt=0.8935, 111 negative triangles 253: dt=0.8935, 107 negative triangles 254: dt=0.8935, 111 negative triangles 255: dt=0.8935, 108 negative triangles 256: dt=0.8935, 109 negative triangles 257: dt=0.8935, 99 negative triangles 258: dt=0.8935, 98 negative triangles 259: dt=0.8935, 93 negative triangles 260: dt=0.8935, 98 negative triangles 261: dt=0.8935, 91 negative triangles 262: dt=0.8935, 88 negative triangles 263: dt=0.8935, 81 negative triangles 264: dt=0.8935, 82 negative triangles 265: dt=0.8935, 90 negative triangles 266: dt=0.8935, 82 negative triangles 267: dt=0.8935, 81 negative triangles 268: dt=0.8935, 81 negative triangles 269: dt=0.8935, 83 negative triangles 270: dt=0.8935, 80 negative triangles 271: dt=0.8935, 78 negative triangles 272: dt=0.8935, 72 negative triangles 273: dt=0.8935, 73 negative triangles 274: dt=0.8935, 67 negative triangles 275: dt=0.8935, 70 negative triangles 276: dt=0.8935, 70 negative triangles 277: dt=0.8935, 68 negative triangles 278: dt=0.8935, 64 negative triangles 279: dt=0.8935, 60 negative triangles 280: dt=0.8935, 63 negative triangles 281: dt=0.8935, 57 negative triangles 282: dt=0.8935, 56 negative triangles 283: dt=0.8935, 58 negative triangles 284: dt=0.8935, 58 negative triangles 285: dt=0.8935, 54 negative triangles 286: dt=0.8935, 53 negative triangles 287: dt=0.8935, 60 negative triangles 288: dt=0.8935, 58 negative triangles 289: dt=0.8935, 58 negative triangles 290: dt=0.8935, 56 negative triangles 291: dt=0.8935, 54 negative triangles 292: dt=0.8935, 58 negative triangles 293: dt=0.8935, 54 negative triangles 294: dt=0.8935, 57 negative triangles 295: dt=0.8935, 53 negative triangles 296: dt=0.8488, 60 negative triangles 297: dt=0.8488, 54 negative triangles 298: dt=0.8488, 53 negative triangles 299: dt=0.8488, 52 negative triangles 300: dt=0.8488, 52 negative triangles 301: dt=0.8488, 50 negative triangles 302: dt=0.8488, 53 negative triangles 303: dt=0.8488, 54 negative triangles 304: dt=0.8488, 55 negative triangles 305: dt=0.8488, 53 negative triangles 306: dt=0.8488, 58 negative triangles 307: dt=0.8488, 53 negative triangles 308: dt=0.8488, 52 negative triangles 309: dt=0.8488, 47 negative triangles 310: dt=0.8488, 44 negative triangles 311: dt=0.8488, 47 negative triangles 312: dt=0.8488, 46 negative triangles 313: dt=0.8488, 44 negative triangles 314: dt=0.8488, 42 negative triangles 315: dt=0.8488, 44 negative triangles 316: dt=0.8488, 48 negative triangles 317: dt=0.8488, 45 negative triangles 318: dt=0.8488, 41 negative triangles 319: dt=0.8488, 44 negative triangles 320: dt=0.8488, 40 negative triangles 321: dt=0.8488, 41 negative triangles 322: dt=0.8488, 37 negative triangles 323: dt=0.8488, 40 negative triangles 324: dt=0.8488, 40 negative triangles 325: dt=0.8488, 41 negative triangles 326: dt=0.8488, 41 negative triangles 327: dt=0.8488, 34 negative triangles 328: dt=0.8488, 41 negative triangles 329: dt=0.8488, 35 negative triangles 330: dt=0.8488, 37 negative triangles 331: dt=0.8488, 32 negative triangles 332: dt=0.8488, 34 negative triangles 333: dt=0.8488, 28 negative triangles 334: dt=0.8488, 33 negative triangles 335: dt=0.8488, 32 negative triangles 336: dt=0.8488, 32 negative triangles 337: dt=0.8488, 30 negative triangles 338: dt=0.8488, 32 negative triangles 339: dt=0.8488, 27 negative triangles 340: dt=0.8488, 25 negative triangles 341: dt=0.8488, 31 negative triangles 342: dt=0.8488, 28 negative triangles 343: dt=0.8488, 29 negative triangles 344: dt=0.8488, 27 negative triangles 345: dt=0.8488, 29 negative triangles 346: dt=0.8488, 24 negative triangles 347: dt=0.8488, 28 negative triangles 348: dt=0.8488, 27 negative triangles 349: dt=0.8488, 26 negative triangles 350: dt=0.8488, 24 negative triangles 351: dt=0.8488, 21 negative triangles 352: dt=0.8488, 22 negative triangles 353: dt=0.8488, 15 negative triangles 354: dt=0.8488, 13 negative triangles 355: dt=0.8488, 14 negative triangles 356: dt=0.8488, 14 negative triangles 357: dt=0.8488, 12 negative triangles 358: dt=0.8488, 13 negative triangles 359: dt=0.8488, 12 negative triangles 360: dt=0.8488, 16 negative triangles 361: dt=0.8488, 11 negative triangles 362: dt=0.8488, 13 negative triangles 363: dt=0.8488, 6 negative triangles 364: dt=0.8488, 7 negative triangles 365: dt=0.8488, 12 negative triangles 366: dt=0.8488, 6 negative triangles 367: dt=0.8488, 6 negative triangles 368: dt=0.8488, 5 negative triangles 369: dt=0.8488, 4 negative triangles 370: dt=0.8488, 3 negative triangles 371: dt=0.8488, 3 negative triangles 372: dt=0.8488, 2 negative triangles 373: dt=0.8488, 2 negative triangles 374: dt=0.8488, 2 negative triangles 375: dt=0.8488, 2 negative triangles 376: dt=0.8488, 2 negative triangles 377: dt=0.8488, 2 negative triangles 378: dt=0.8488, 2 negative triangles 379: dt=0.8488, 2 negative triangles 380: dt=0.8488, 2 negative triangles 381: dt=0.8488, 2 negative triangles 382: dt=0.8064, 2 negative triangles 383: dt=0.8064, 2 negative triangles 384: dt=0.8064, 2 negative triangles 385: dt=0.8064, 2 negative triangles 386: dt=0.8064, 2 negative triangles 387: dt=0.8064, 2 negative triangles 388: dt=0.8064, 2 negative triangles 389: dt=0.8064, 2 negative triangles 390: dt=0.8064, 2 negative triangles 391: dt=0.8064, 2 negative triangles 392: dt=0.7660, 2 negative triangles 393: dt=0.7660, 2 negative triangles 394: dt=0.7660, 2 negative triangles 395: dt=0.7660, 2 negative triangles 396: dt=0.7660, 2 negative triangles 397: dt=0.7660, 2 negative triangles 398: dt=0.7660, 2 negative triangles expanding nbhd size to 1 399: dt=0.9900, 2 negative triangles 400: dt=0.9900, 2 negative triangles 401: dt=0.9900, 2 negative triangles 402: dt=0.9405, 2 negative triangles 403: dt=0.9405, 2 negative triangles 404: dt=0.9405, 2 negative triangles 405: dt=0.9405, 2 negative triangles 406: dt=0.9405, 2 negative triangles 407: dt=0.9405, 2 negative triangles 408: dt=0.9405, 2 negative triangles 409: dt=0.9405, 2 negative triangles 410: dt=0.9405, 2 negative triangles 411: dt=0.9405, 2 negative triangles 412: dt=0.8935, 2 negative triangles 413: dt=0.8935, 2 negative triangles 414: dt=0.8935, 2 negative triangles 415: dt=0.8935, 2 negative triangles 416: dt=0.8935, 2 negative triangles 417: dt=0.8935, 2 negative triangles 418: dt=0.8935, 2 negative triangles 419: dt=0.8935, 2 negative triangles 420: dt=0.8935, 2 negative triangles 421: dt=0.8935, 2 negative triangles 422: dt=0.8488, 2 negative triangles 423: dt=0.8488, 2 negative triangles 424: dt=0.8488, 2 negative triangles 425: dt=0.8488, 2 negative triangles 426: dt=0.8488, 2 negative triangles 427: dt=0.8488, 2 negative triangles 428: dt=0.8488, 2 negative triangles 429: dt=0.8488, 2 negative triangles 430: dt=0.8488, 2 negative triangles 431: dt=0.8488, 2 negative triangles 432: dt=0.8064, 2 negative triangles 433: dt=0.8064, 2 negative triangles 434: dt=0.8064, 2 negative triangles 435: dt=0.8064, 2 negative triangles 436: dt=0.8064, 2 negative triangles 437: dt=0.8064, 2 negative triangles 438: dt=0.8064, 2 negative triangles 439: dt=0.8064, 2 negative triangles 440: dt=0.8064, 2 negative triangles 441: dt=0.8064, 2 negative triangles 442: dt=0.7660, 2 negative triangles 443: dt=0.7660, 2 negative triangles 444: dt=0.7660, 2 negative triangles 445: dt=0.7660, 2 negative triangles 446: dt=0.7660, 2 negative triangles 447: dt=0.7660, 2 negative triangles 448: dt=0.7660, 2 negative triangles 449: dt=0.7660, 2 negative triangles 450: dt=0.7660, 2 negative triangles 451: dt=0.7660, 2 negative triangles 452: dt=0.7277, 2 negative triangles 453: dt=0.7277, 2 negative triangles 454: dt=0.7277, 2 negative triangles 455: dt=0.7277, 2 negative triangles 456: dt=0.7277, 2 negative triangles 457: dt=0.7277, 2 negative triangles 458: dt=0.7277, 2 negative triangles 459: dt=0.7277, 2 negative triangles 460: dt=0.7277, 2 negative triangles 461: dt=0.7277, 2 negative triangles 462: dt=0.6914, 2 negative triangles 463: dt=0.6914, 2 negative triangles 464: dt=0.6914, 2 negative triangles 465: dt=0.6914, 2 negative triangles 466: dt=0.6914, 2 negative triangles 467: dt=0.6914, 2 negative triangles 468: dt=0.6914, 2 negative triangles 469: dt=0.6914, 2 negative triangles 470: dt=0.6914, 2 negative triangles 471: dt=0.6914, 2 negative triangles 472: dt=0.6568, 2 negative triangles 473: dt=0.6568, 2 negative triangles 474: dt=0.6568, 2 negative triangles 475: dt=0.6568, 2 negative triangles 476: dt=0.6568, 2 negative triangles 477: dt=0.6568, 2 negative triangles 478: dt=0.6568, 2 negative triangles 479: dt=0.6568, 2 negative triangles 480: dt=0.6568, 2 negative triangles 481: dt=0.6568, 2 negative triangles 482: dt=0.6239, 2 negative triangles 483: dt=0.6239, 2 negative triangles 484: dt=0.6239, 2 negative triangles 485: dt=0.6239, 2 negative triangles 486: dt=0.6239, 2 negative triangles 487: dt=0.6239, 2 negative triangles 488: dt=0.6239, 2 negative triangles 489: dt=0.6239, 2 negative triangles 490: dt=0.6239, 2 negative triangles 491: dt=0.6239, 2 negative triangles 492: dt=0.5927, 2 negative triangles 493: dt=0.5927, 2 negative triangles 494: dt=0.5927, 2 negative triangles 495: dt=0.5927, 2 negative triangles 496: dt=0.5927, 2 negative triangles 497: dt=0.5927, 2 negative triangles 498: dt=0.5927, 2 negative triangles 499: dt=0.5927, 2 negative triangles 500: dt=0.5927, 2 negative triangles 501: dt=0.5927, 2 negative triangles 502: dt=0.5631, 2 negative triangles 503: dt=0.5631, 2 negative triangles 504: dt=0.5631, 2 negative triangles 505: dt=0.5631, 2 negative triangles 506: dt=0.5631, 2 negative triangles 507: dt=0.5631, 2 negative triangles 508: dt=0.5631, 2 negative triangles 509: dt=0.5631, 2 negative triangles 510: dt=0.5631, 2 negative triangles 511: dt=0.5631, 2 negative triangles 512: dt=0.5350, 2 negative triangles 513: dt=0.5350, 2 negative triangles 514: dt=0.5350, 2 negative triangles 515: dt=0.5350, 2 negative triangles 516: dt=0.5350, 2 negative triangles 517: dt=0.5350, 2 negative triangles 518: dt=0.5350, 2 negative triangles 519: dt=0.5350, 2 negative triangles 520: dt=0.5350, 2 negative triangles 521: dt=0.5350, 2 negative triangles 522: dt=0.5082, 2 negative triangles 523: dt=0.5082, 2 negative triangles 524: dt=0.5082, 2 negative triangles 525: dt=0.5082, 2 negative triangles 526: dt=0.5082, 2 negative triangles 527: dt=0.5082, 2 negative triangles 528: dt=0.5082, 2 negative triangles 529: dt=0.5082, 2 negative triangles 530: dt=0.5082, 2 negative triangles 531: dt=0.5082, 2 negative triangles 532: dt=0.4828, 2 negative triangles 533: dt=0.4828, 2 negative triangles 534: dt=0.4828, 2 negative triangles 535: dt=0.4828, 2 negative triangles 536: dt=0.4828, 2 negative triangles 537: dt=0.4828, 2 negative triangles 538: dt=0.4828, 2 negative triangles 539: dt=0.4828, 2 negative triangles 540: dt=0.4828, 2 negative triangles 541: dt=0.4828, 2 negative triangles 542: dt=0.4587, 2 negative triangles 543: dt=0.4587, 2 negative triangles 544: dt=0.4587, 2 negative triangles 545: dt=0.4587, 2 negative triangles 546: dt=0.4587, 2 negative triangles 547: dt=0.4587, 2 negative triangles 548: dt=0.4587, 2 negative triangles 549: dt=0.4587, 2 negative triangles 550: dt=0.4587, 2 negative triangles 551: dt=0.4587, 2 negative triangles 552: dt=0.4357, 2 negative triangles 553: dt=0.4357, 2 negative triangles 554: dt=0.4357, 2 negative triangles 555: dt=0.4357, 2 negative triangles 556: dt=0.4357, 2 negative triangles 557: dt=0.4357, 2 negative triangles 558: dt=0.4357, 2 negative triangles 559: dt=0.4357, 2 negative triangles 560: dt=0.4357, 2 negative triangles 561: dt=0.4357, 2 negative triangles 562: dt=0.4139, 2 negative triangles 563: dt=0.4139, 2 negative triangles 564: dt=0.4139, 2 negative triangles 565: dt=0.4139, 2 negative triangles 566: dt=0.4139, 2 negative triangles 567: dt=0.4139, 2 negative triangles 568: dt=0.4139, 2 negative triangles 569: dt=0.4139, 2 negative triangles 570: dt=0.4139, 2 negative triangles 571: dt=0.4139, 2 negative triangles 572: dt=0.3932, 2 negative triangles 573: dt=0.3932, 2 negative triangles 574: dt=0.3932, 2 negative triangles 575: dt=0.3932, 2 negative triangles 576: dt=0.3932, 2 negative triangles 577: dt=0.3932, 2 negative triangles 578: dt=0.3932, 2 negative triangles 579: dt=0.3932, 2 negative triangles 580: dt=0.3932, 2 negative triangles 581: dt=0.3932, 2 negative triangles 582: dt=0.3736, 2 negative triangles 583: dt=0.3736, 2 negative triangles 584: dt=0.3736, 2 negative triangles 585: dt=0.3736, 2 negative triangles 586: dt=0.3736, 2 negative triangles 587: dt=0.3736, 2 negative triangles 588: dt=0.3736, 2 negative triangles 589: dt=0.3736, 2 negative triangles 590: dt=0.3736, 2 negative triangles 591: dt=0.3736, 2 negative triangles 592: dt=0.3549, 2 negative triangles 593: dt=0.3549, 2 negative triangles 594: dt=0.3549, 2 negative triangles 595: dt=0.3549, 2 negative triangles 596: dt=0.3549, 2 negative triangles 597: dt=0.3549, 2 negative triangles 598: dt=0.3549, 2 negative triangles 599: dt=0.3549, 2 negative triangles 600: dt=0.3549, 2 negative triangles 601: dt=0.3549, 2 negative triangles 602: dt=0.3372, 2 negative triangles 603: dt=0.3372, 2 negative triangles 604: dt=0.3372, 2 negative triangles 605: dt=0.3372, 2 negative triangles 606: dt=0.3372, 2 negative triangles 607: dt=0.3372, 2 negative triangles 608: dt=0.3372, 2 negative triangles 609: dt=0.3372, 2 negative triangles 610: dt=0.3372, 2 negative triangles 611: dt=0.3372, 2 negative triangles 612: dt=0.3203, 2 negative triangles 613: dt=0.3203, 2 negative triangles 614: dt=0.3203, 2 negative triangles 615: dt=0.3203, 2 negative triangles 616: dt=0.3203, 2 negative triangles 617: dt=0.3203, 2 negative triangles 618: dt=0.3203, 2 negative triangles 619: dt=0.3203, 2 negative triangles 620: dt=0.3203, 2 negative triangles 621: dt=0.3203, 2 negative triangles 622: dt=0.3043, 2 negative triangles 623: dt=0.3043, 2 negative triangles 624: dt=0.3043, 2 negative triangles 625: dt=0.3043, 2 negative triangles 626: dt=0.3043, 2 negative triangles 627: dt=0.3043, 2 negative triangles 628: dt=0.3043, 2 negative triangles 629: dt=0.3043, 2 negative triangles 630: dt=0.3043, 2 negative triangles 631: dt=0.3043, 2 negative triangles 632: dt=0.2891, 2 negative triangles 633: dt=0.2891, 2 negative triangles 634: dt=0.2891, 2 negative triangles 635: dt=0.2891, 2 negative triangles 636: dt=0.2891, 2 negative triangles 637: dt=0.2891, 2 negative triangles 638: dt=0.2891, 2 negative triangles 639: dt=0.2891, 2 negative triangles 640: dt=0.2891, 2 negative triangles 641: dt=0.2891, 2 negative triangles 642: dt=0.2746, 2 negative triangles 643: dt=0.2746, 2 negative triangles 644: dt=0.2746, 2 negative triangles 645: dt=0.2746, 2 negative triangles 646: dt=0.2746, 2 negative triangles 647: dt=0.2746, 2 negative triangles 648: dt=0.2746, 2 negative triangles 649: dt=0.2746, 2 negative triangles 650: dt=0.2746, 2 negative triangles 651: dt=0.2746, 2 negative triangles 652: dt=0.2609, 2 negative triangles 653: dt=0.2609, 2 negative triangles 654: dt=0.2609, 2 negative triangles 655: dt=0.2609, 2 negative triangles 656: dt=0.2609, 2 negative triangles 657: dt=0.2609, 2 negative triangles 658: dt=0.2609, 2 negative triangles 659: dt=0.2609, 2 negative triangles 660: dt=0.2609, 2 negative triangles 661: dt=0.2609, 2 negative triangles 662: dt=0.2478, 2 negative triangles 663: dt=0.2478, 2 negative triangles 664: dt=0.2478, 2 negative triangles 665: dt=0.2478, 2 negative triangles 666: dt=0.2478, 2 negative triangles 667: dt=0.2478, 2 negative triangles 668: dt=0.2478, 2 negative triangles 669: dt=0.2478, 2 negative triangles 670: dt=0.2478, 2 negative triangles 671: dt=0.2478, 2 negative triangles 672: dt=0.2354, 2 negative triangles 673: dt=0.2354, 2 negative triangles 674: dt=0.2354, 2 negative triangles 675: dt=0.2354, 2 negative triangles 676: dt=0.2354, 2 negative triangles 677: dt=0.2354, 2 negative triangles 678: dt=0.2354, 2 negative triangles 679: dt=0.2354, 2 negative triangles 680: dt=0.2354, 2 negative triangles 681: dt=0.2354, 2 negative triangles 682: dt=0.2237, 2 negative triangles 683: dt=0.2237, 2 negative triangles 684: dt=0.2237, 2 negative triangles 685: dt=0.2237, 2 negative triangles 686: dt=0.2237, 2 negative triangles 687: dt=0.2237, 2 negative triangles 688: dt=0.2237, 2 negative triangles 689: dt=0.2237, 2 negative triangles 690: dt=0.2237, 2 negative triangles 691: dt=0.2237, 2 negative triangles 692: dt=0.2125, 2 negative triangles 693: dt=0.2125, 2 negative triangles 694: dt=0.2125, 2 negative triangles 695: dt=0.2125, 2 negative triangles 696: dt=0.2125, 2 negative triangles 697: dt=0.2125, 2 negative triangles 698: dt=0.2125, 2 negative triangles 699: dt=0.2125, 2 negative triangles 700: dt=0.2125, 2 negative triangles 701: dt=0.2125, 2 negative triangles 702: dt=0.2019, 2 negative triangles 703: dt=0.2019, 2 negative triangles 704: dt=0.2019, 2 negative triangles 705: dt=0.2019, 2 negative triangles 706: dt=0.2019, 2 negative triangles 707: dt=0.2019, 2 negative triangles 708: dt=0.2019, 2 negative triangles 709: dt=0.2019, 2 negative triangles 710: dt=0.2019, 2 negative triangles 711: dt=0.2019, 2 negative triangles 712: dt=0.1918, 2 negative triangles 713: dt=0.1918, 2 negative triangles 714: dt=0.1918, 2 negative triangles 715: dt=0.1918, 2 negative triangles 716: dt=0.1918, 2 negative triangles 717: dt=0.1918, 2 negative triangles 718: dt=0.1918, 2 negative triangles 719: dt=0.1918, 2 negative triangles 720: dt=0.1918, 2 negative triangles 721: dt=0.1918, 2 negative triangles 722: dt=0.1822, 2 negative triangles 723: dt=0.1822, 2 negative triangles 724: dt=0.1822, 2 negative triangles 725: dt=0.1822, 2 negative triangles 726: dt=0.1822, 2 negative triangles 727: dt=0.1822, 2 negative triangles 728: dt=0.1822, 2 negative triangles 729: dt=0.1822, 2 negative triangles 730: dt=0.1822, 2 negative triangles 731: dt=0.1822, 2 negative triangles 732: dt=0.1731, 2 negative triangles 733: dt=0.1731, 2 negative triangles 734: dt=0.1731, 2 negative triangles 735: dt=0.1731, 2 negative triangles 736: dt=0.1731, 2 negative triangles 737: dt=0.1731, 2 negative triangles 738: dt=0.1731, 2 negative triangles 739: dt=0.1731, 2 negative triangles 740: dt=0.1731, 2 negative triangles 741: dt=0.1731, 2 negative triangles 742: dt=0.1644, 2 negative triangles 743: dt=0.1644, 2 negative triangles 744: dt=0.1644, 2 negative triangles 745: dt=0.1644, 2 negative triangles 746: dt=0.1644, 2 negative triangles 747: dt=0.1644, 2 negative triangles 748: dt=0.1644, 2 negative triangles 749: dt=0.1644, 2 negative triangles 750: dt=0.1644, 2 negative triangles 751: dt=0.1644, 2 negative triangles 752: dt=0.1562, 2 negative triangles 753: dt=0.1562, 2 negative triangles 754: dt=0.1562, 2 negative triangles 755: dt=0.1562, 2 negative triangles 756: dt=0.1562, 2 negative triangles 757: dt=0.1562, 2 negative triangles 758: dt=0.1562, 2 negative triangles 759: dt=0.1562, 2 negative triangles 760: dt=0.1562, 2 negative triangles 761: dt=0.1562, 2 negative triangles 762: dt=0.1484, 2 negative triangles 763: dt=0.1484, 2 negative triangles 764: dt=0.1484, 2 negative triangles 765: dt=0.1484, 2 negative triangles 766: dt=0.1484, 2 negative triangles 767: dt=0.1484, 2 negative triangles 768: dt=0.1484, 2 negative triangles 769: dt=0.1484, 2 negative triangles 770: dt=0.1484, 2 negative triangles 771: dt=0.1484, 2 negative triangles 772: dt=0.1410, 2 negative triangles 773: dt=0.1410, 2 negative triangles 774: dt=0.1410, 2 negative triangles 775: dt=0.1410, 2 negative triangles 776: dt=0.1410, 2 negative triangles 777: dt=0.1410, 2 negative triangles 778: dt=0.1410, 2 negative triangles 779: dt=0.1410, 2 negative triangles 780: dt=0.1410, 2 negative triangles 781: dt=0.1410, 2 negative triangles 782: dt=0.1339, 2 negative triangles 783: dt=0.1339, 2 negative triangles 784: dt=0.1339, 2 negative triangles 785: dt=0.1339, 2 negative triangles 786: dt=0.1339, 2 negative triangles 787: dt=0.1339, 2 negative triangles 788: dt=0.1339, 2 negative triangles 789: dt=0.1339, 2 negative triangles 790: dt=0.1339, 2 negative triangles 791: dt=0.1339, 2 negative triangles 792: dt=0.1272, 2 negative triangles 793: dt=0.1272, 2 negative triangles 794: dt=0.1272, 2 negative triangles 795: dt=0.1272, 2 negative triangles 796: dt=0.1272, 2 negative triangles 797: dt=0.1272, 2 negative triangles 798: dt=0.1272, 2 negative triangles 799: dt=0.1272, 2 negative triangles 800: dt=0.1272, 2 negative triangles 801: dt=0.1272, 2 negative triangles 802: dt=0.1209, 2 negative triangles 803: dt=0.1209, 2 negative triangles 804: dt=0.1209, 2 negative triangles 805: dt=0.1209, 2 negative triangles 806: dt=0.1209, 2 negative triangles 807: dt=0.1209, 2 negative triangles 808: dt=0.1209, 2 negative triangles 809: dt=0.1209, 2 negative triangles 810: dt=0.1209, 2 negative triangles 811: dt=0.1209, 2 negative triangles 812: dt=0.1148, 2 negative triangles 813: dt=0.1148, 2 negative triangles 814: dt=0.1148, 2 negative triangles 815: dt=0.1148, 2 negative triangles 816: dt=0.1148, 2 negative triangles 817: dt=0.1148, 2 negative triangles 818: dt=0.1148, 2 negative triangles 819: dt=0.1148, 2 negative triangles 820: dt=0.1148, 2 negative triangles 821: dt=0.1148, 2 negative triangles 822: dt=0.1091, 2 negative triangles 823: dt=0.1091, 2 negative triangles 824: dt=0.1091, 2 negative triangles 825: dt=0.1091, 2 negative triangles 826: dt=0.1091, 2 negative triangles 827: dt=0.1091, 2 negative triangles 828: dt=0.1091, 2 negative triangles 829: dt=0.1091, 2 negative triangles 830: dt=0.1091, 2 negative triangles 831: dt=0.1091, 2 negative triangles 832: dt=0.1036, 2 negative triangles 833: dt=0.1036, 2 negative triangles 834: dt=0.1036, 2 negative triangles 835: dt=0.1036, 2 negative triangles 836: dt=0.1036, 2 negative triangles 837: dt=0.1036, 2 negative triangles 838: dt=0.1036, 2 negative triangles 839: dt=0.1036, 2 negative triangles 840: dt=0.1036, 2 negative triangles 841: dt=0.1036, 2 negative triangles 842: dt=0.0984, 2 negative triangles 843: dt=0.0984, 2 negative triangles 844: dt=0.0984, 2 negative triangles 845: dt=0.0984, 2 negative triangles 846: dt=0.0984, 2 negative triangles 847: dt=0.0984, 2 negative triangles 848: dt=0.0984, 2 negative triangles 849: dt=0.0984, 2 negative triangles 850: dt=0.0984, 2 negative triangles 851: dt=0.0984, 2 negative triangles 852: dt=0.0935, 2 negative triangles 853: dt=0.0935, 2 negative triangles 854: dt=0.0935, 2 negative triangles 855: dt=0.0935, 2 negative triangles 856: dt=0.0935, 2 negative triangles 857: dt=0.0935, 2 negative triangles 858: dt=0.0935, 2 negative triangles 859: dt=0.0935, 2 negative triangles 860: dt=0.0935, 2 negative triangles 861: dt=0.0935, 2 negative triangles 862: dt=0.0888, 2 negative triangles 863: dt=0.0888, 2 negative triangles 864: dt=0.0888, 2 negative triangles 865: dt=0.0888, 2 negative triangles 866: dt=0.0888, 2 negative triangles 867: dt=0.0888, 2 negative triangles 868: dt=0.0888, 2 negative triangles 869: dt=0.0888, 2 negative triangles 870: dt=0.0888, 2 negative triangles 871: dt=0.0888, 2 negative triangles 872: dt=0.0844, 2 negative triangles 873: dt=0.0844, 2 negative triangles 874: dt=0.0844, 2 negative triangles 875: dt=0.0844, 2 negative triangles 876: dt=0.0844, 2 negative triangles 877: dt=0.0844, 2 negative triangles 878: dt=0.0844, 2 negative triangles 879: dt=0.0844, 2 negative triangles 880: dt=0.0844, 2 negative triangles 881: dt=0.0844, 2 negative triangles 882: dt=0.0802, 2 negative triangles 883: dt=0.0802, 2 negative triangles 884: dt=0.0802, 2 negative triangles 885: dt=0.0802, 2 negative triangles 886: dt=0.0802, 2 negative triangles 887: dt=0.0802, 2 negative triangles 888: dt=0.0802, 2 negative triangles 889: dt=0.0802, 2 negative triangles 890: dt=0.0802, 2 negative triangles 891: dt=0.0802, 2 negative triangles 892: dt=0.0762, 2 negative triangles 893: dt=0.0762, 2 negative triangles 894: dt=0.0762, 2 negative triangles 895: dt=0.0762, 2 negative triangles 896: dt=0.0762, 2 negative triangles 897: dt=0.0762, 2 negative triangles 898: dt=0.0762, 2 negative triangles 899: dt=0.0762, 2 negative triangles 900: dt=0.0762, 2 negative triangles 901: dt=0.0762, 2 negative triangles 902: dt=0.0724, 2 negative triangles 903: dt=0.0724, 2 negative triangles 904: dt=0.0724, 2 negative triangles 905: dt=0.0724, 2 negative triangles 906: dt=0.0724, 2 negative triangles 907: dt=0.0724, 2 negative triangles 908: dt=0.0724, 2 negative triangles 909: dt=0.0724, 2 negative triangles 910: dt=0.0724, 2 negative triangles 911: dt=0.0724, 2 negative triangles 912: dt=0.0687, 2 negative triangles 913: dt=0.0687, 2 negative triangles 914: dt=0.0687, 2 negative triangles 915: dt=0.0687, 2 negative triangles 916: dt=0.0687, 2 negative triangles 917: dt=0.0687, 2 negative triangles 918: dt=0.0687, 2 negative triangles 919: dt=0.0687, 2 negative triangles 920: dt=0.0687, 2 negative triangles 921: dt=0.0687, 2 negative triangles 922: dt=0.0653, 2 negative triangles 923: dt=0.0653, 2 negative triangles 924: dt=0.0653, 2 negative triangles 925: dt=0.0653, 2 negative triangles 926: dt=0.0653, 2 negative triangles 927: dt=0.0653, 2 negative triangles 928: dt=0.0653, 2 negative triangles 929: dt=0.0653, 2 negative triangles 930: dt=0.0653, 2 negative triangles 931: dt=0.0653, 2 negative triangles 932: dt=0.0620, 2 negative triangles 933: dt=0.0620, 2 negative triangles 934: dt=0.0620, 2 negative triangles 935: dt=0.0620, 2 negative triangles 936: dt=0.0620, 2 negative triangles 937: dt=0.0620, 2 negative triangles 938: dt=0.0620, 2 negative triangles 939: dt=0.0620, 2 negative triangles 940: dt=0.0620, 2 negative triangles 941: dt=0.0620, 2 negative triangles 942: dt=0.0589, 2 negative triangles 943: dt=0.0589, 2 negative triangles 944: dt=0.0589, 2 negative triangles 945: dt=0.0589, 2 negative triangles 946: dt=0.0589, 2 negative triangles 947: dt=0.0589, 2 negative triangles 948: dt=0.0589, 2 negative triangles 949: dt=0.0589, 2 negative triangles 950: dt=0.0589, 2 negative triangles 951: dt=0.0589, 2 negative triangles 952: dt=0.0560, 2 negative triangles 953: dt=0.0560, 2 negative triangles 954: dt=0.0560, 2 negative triangles 955: dt=0.0560, 2 negative triangles 956: dt=0.0560, 2 negative triangles 957: dt=0.0560, 2 negative triangles 958: dt=0.0560, 2 negative triangles 959: dt=0.0560, 2 negative triangles 960: dt=0.0560, 2 negative triangles 961: dt=0.0560, 2 negative triangles 962: dt=0.0532, 2 negative triangles 963: dt=0.0532, 2 negative triangles 964: dt=0.0532, 2 negative triangles 965: dt=0.0532, 2 negative triangles 966: dt=0.0532, 2 negative triangles 967: dt=0.0532, 2 negative triangles 968: dt=0.0532, 2 negative triangles 969: dt=0.0532, 2 negative triangles 970: dt=0.0532, 2 negative triangles 971: dt=0.0532, 2 negative triangles 972: dt=0.0505, 2 negative triangles 973: dt=0.0505, 2 negative triangles 974: dt=0.0505, 2 negative triangles 975: dt=0.0505, 2 negative triangles 976: dt=0.0505, 2 negative triangles 977: dt=0.0505, 2 negative triangles 978: dt=0.0505, 2 negative triangles 979: dt=0.0505, 2 negative triangles 980: dt=0.0505, 2 negative triangles 981: dt=0.0505, 2 negative triangles 982: dt=0.0480, 2 negative triangles 983: dt=0.0480, 2 negative triangles 984: dt=0.0480, 2 negative triangles 985: dt=0.0480, 2 negative triangles 986: dt=0.0480, 2 negative triangles 987: dt=0.0480, 2 negative triangles 988: dt=0.0480, 2 negative triangles 989: dt=0.0480, 2 negative triangles 990: dt=0.0480, 2 negative triangles 991: dt=0.0480, 2 negative triangles 992: dt=0.0456, 2 negative triangles 993: dt=0.0456, 2 negative triangles 994: dt=0.0456, 2 negative triangles 995: dt=0.0456, 2 negative triangles 996: dt=0.0456, 2 negative triangles 997: dt=0.0456, 2 negative triangles 998: dt=0.0456, 2 negative triangles 999: dt=0.0456, 2 negative triangles 1000: dt=0.0456, 2 negative triangles 1001: dt=0.0456, 2 negative triangles 1002: dt=0.0433, 2 negative triangles 1003: dt=0.0433, 2 negative triangles 1004: dt=0.0433, 2 negative triangles 1005: dt=0.0433, 2 negative triangles 1006: dt=0.0433, 2 negative triangles 1007: dt=0.0433, 2 negative triangles 1008: dt=0.0433, 2 negative triangles 1009: dt=0.0433, 2 negative triangles 1010: dt=0.0433, 2 negative triangles 1011: dt=0.0433, 2 negative triangles 1012: dt=0.0412, 2 negative triangles 1013: dt=0.0412, 2 negative triangles 1014: dt=0.0412, 2 negative triangles 1015: dt=0.0412, 2 negative triangles 1016: dt=0.0412, 2 negative triangles 1017: dt=0.0412, 2 negative triangles 1018: dt=0.0412, 2 negative triangles 1019: dt=0.0412, 2 negative triangles 1020: dt=0.0412, 2 negative triangles 1021: dt=0.0412, 2 negative triangles 1022: dt=0.0391, 2 negative triangles 1023: dt=0.0391, 2 negative triangles 1024: dt=0.0391, 2 negative triangles 1025: dt=0.0391, 2 negative triangles 1026: dt=0.0391, 2 negative triangles 1027: dt=0.0391, 2 negative triangles 1028: dt=0.0391, 2 negative triangles 1029: dt=0.0391, 2 negative triangles 1030: dt=0.0391, 2 negative triangles 1031: dt=0.0391, 2 negative triangles 1032: dt=0.0371, 2 negative triangles 1033: dt=0.0371, 2 negative triangles 1034: dt=0.0371, 2 negative triangles 1035: dt=0.0371, 2 negative triangles 1036: dt=0.0371, 2 negative triangles 1037: dt=0.0371, 2 negative triangles 1038: dt=0.0371, 2 negative triangles 1039: dt=0.0371, 2 negative triangles 1040: dt=0.0371, 2 negative triangles 1041: dt=0.0371, 2 negative triangles 1042: dt=0.0353, 2 negative triangles 1043: dt=0.0353, 2 negative triangles 1044: dt=0.0353, 2 negative triangles 1045: dt=0.0353, 2 negative triangles 1046: dt=0.0353, 2 negative triangles 1047: dt=0.0353, 2 negative triangles 1048: dt=0.0353, 2 negative triangles 1049: dt=0.0353, 2 negative triangles 1050: dt=0.0353, 2 negative triangles 1051: dt=0.0353, 2 negative triangles 1052: dt=0.0335, 2 negative triangles 1053: dt=0.0335, 2 negative triangles 1054: dt=0.0335, 2 negative triangles 1055: dt=0.0335, 2 negative triangles 1056: dt=0.0335, 2 negative triangles 1057: dt=0.0335, 2 negative triangles 1058: dt=0.0335, 2 negative triangles 1059: dt=0.0335, 2 negative triangles 1060: dt=0.0335, 2 negative triangles 1061: dt=0.0335, 2 negative triangles 1062: dt=0.0319, 2 negative triangles 1063: dt=0.0319, 2 negative triangles 1064: dt=0.0319, 2 negative triangles 1065: dt=0.0319, 2 negative triangles 1066: dt=0.0319, 2 negative triangles 1067: dt=0.0319, 2 negative triangles 1068: dt=0.0319, 2 negative triangles 1069: dt=0.0319, 2 negative triangles 1070: dt=0.0319, 2 negative triangles 1071: dt=0.0319, 2 negative triangles 1072: dt=0.0303, 2 negative triangles 1073: dt=0.0303, 2 negative triangles 1074: dt=0.0303, 2 negative triangles 1075: dt=0.0303, 2 negative triangles 1076: dt=0.0303, 2 negative triangles 1077: dt=0.0303, 2 negative triangles 1078: dt=0.0303, 2 negative triangles 1079: dt=0.0303, 2 negative triangles 1080: dt=0.0303, 2 negative triangles 1081: dt=0.0303, 2 negative triangles 1082: dt=0.0287, 2 negative triangles 1083: dt=0.0287, 2 negative triangles 1084: dt=0.0287, 2 negative triangles 1085: dt=0.0287, 2 negative triangles 1086: dt=0.0287, 2 negative triangles 1087: dt=0.0287, 2 negative triangles 1088: dt=0.0287, 2 negative triangles 1089: dt=0.0287, 2 negative triangles 1090: dt=0.0287, 2 negative triangles 1091: dt=0.0287, 2 negative triangles 1092: dt=0.0273, 2 negative triangles 1093: dt=0.0273, 2 negative triangles 1094: dt=0.0273, 2 negative triangles 1095: dt=0.0273, 2 negative triangles 1096: dt=0.0273, 2 negative triangles 1097: dt=0.0273, 2 negative triangles 1098: dt=0.0273, 2 negative triangles 1099: dt=0.0273, 2 negative triangles 1100: dt=0.0273, 2 negative triangles 1101: dt=0.0273, 2 negative triangles 1102: dt=0.0259, 2 negative triangles 1103: dt=0.0259, 2 negative triangles 1104: 2 negative triangles writing spherical brain to ../surf/rh.sphere spherical transformation took 0.38 hours mris_sphere utimesec 8569.921674 mris_sphere stimesec 69.663792 mris_sphere ru_maxrss 482956 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 25009635 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 15376 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 304248 mris_sphere ru_nivcsw 38468 FSRUNTIME@ mris_sphere 0.3827 hours 1 threads #-------------------------------------------- #@# Surf Reg rh Tue May 25 22:25:18 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_register -curv -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts cmdline mris_register -curv -rusage /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/touch/rusage.mris_register.rh.dat ../surf/rh.sphere /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif ../surf/rh.sphere.reg 0 inflated.H 1 sulc 2 smoothwm (computed) $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=blg43, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=blg43, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = 0.000, std = 6.228 curvature mean = 0.014, std = 0.814 curvature mean = 0.017, std = 0.892 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, -16.00, 0.00) sse = 534939.1, tmin=1.3036 d=32.00 min @ (8.00, 8.00, 8.00) sse = 389750.5, tmin=2.5874 d=16.00 min @ (4.00, 0.00, -4.00) sse = 360379.0, tmin=3.9022 d=8.00 min @ (-2.00, -2.00, 2.00) sse = 344940.2, tmin=5.2261 d=4.00 min @ (0.00, 1.00, -1.00) sse = 343169.7, tmin=6.6269 d=2.00 min @ (0.00, -0.50, 0.50) sse = 342213.8, tmin=8.0488 d=1.00 min @ (0.00, 0.00, -0.25) sse = 342095.5, tmin=9.4643 d=0.50 min @ (0.00, 0.12, 0.00) sse = 342083.3, tmin=10.8641 tol=1.0e+00, sigma=0.5, host=blg43, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 10.86 min curvature mean = -0.007, std = 0.837 curvature mean = 0.006, std = 0.959 curvature mean = -0.011, std = 0.844 curvature mean = 0.002, std = 0.984 curvature mean = -0.013, std = 0.844 curvature mean = 0.001, std = 0.993 2 Reading smoothwm curvature mean = -0.034, std = 0.349 curvature mean = 0.034, std = 0.235 curvature mean = 0.045, std = 0.308 curvature mean = 0.033, std = 0.291 curvature mean = 0.023, std = 0.483 curvature mean = 0.033, std = 0.317 curvature mean = 0.013, std = 0.623 curvature mean = 0.034, std = 0.327 curvature mean = 0.006, std = 0.729 MRISregister() return, current seed 0 -01: dt=0.0000, 164 negative triangles 112: dt=0.9900, 164 negative triangles expanding nbhd size to 1 113: dt=0.9900, 197 negative triangles 114: dt=0.9900, 163 negative triangles 115: dt=0.9900, 158 negative triangles 116: dt=0.9900, 157 negative triangles 117: dt=0.9900, 153 negative triangles 118: dt=0.9900, 145 negative triangles 119: dt=0.9900, 138 negative triangles 120: dt=0.9900, 135 negative triangles 121: dt=0.9900, 139 negative triangles 122: dt=0.9900, 126 negative triangles 123: dt=0.9900, 127 negative triangles 124: dt=0.9900, 126 negative triangles 125: dt=0.9900, 117 negative triangles 126: dt=0.9900, 109 negative triangles 127: dt=0.9900, 108 negative triangles 128: dt=0.9900, 109 negative triangles 129: dt=0.9900, 102 negative triangles 130: dt=0.9900, 99 negative triangles 131: dt=0.9900, 97 negative triangles 132: dt=0.9900, 94 negative triangles 133: dt=0.9900, 95 negative triangles 134: dt=0.9900, 96 negative triangles 135: dt=0.9900, 93 negative triangles 136: dt=0.9900, 90 negative triangles 137: dt=0.9900, 90 negative triangles 138: dt=0.9900, 88 negative triangles 139: dt=0.9900, 86 negative triangles 140: dt=0.9900, 83 negative triangles 141: dt=0.9900, 82 negative triangles 142: dt=0.9900, 82 negative triangles 143: dt=0.9900, 84 negative triangles 144: dt=0.9900, 79 negative triangles 145: dt=0.9900, 78 negative triangles 146: dt=0.9900, 76 negative triangles 147: dt=0.9900, 77 negative triangles 148: dt=0.9900, 73 negative triangles 149: dt=0.9900, 73 negative triangles 150: dt=0.9900, 77 negative triangles 151: dt=0.9900, 77 negative triangles 152: dt=0.9900, 79 negative triangles 153: dt=0.9900, 76 negative triangles 154: dt=0.9900, 76 negative triangles 155: dt=0.9900, 74 negative triangles 156: dt=0.9900, 74 negative triangles 157: dt=0.9900, 71 negative triangles 158: dt=0.9900, 73 negative triangles 159: dt=0.9900, 70 negative triangles 160: dt=0.9900, 67 negative triangles 161: dt=0.9900, 64 negative triangles 162: dt=0.9900, 66 negative triangles 163: dt=0.9900, 60 negative triangles 164: dt=0.9900, 66 negative triangles 165: dt=0.9900, 58 negative triangles 166: dt=0.9900, 57 negative triangles 167: dt=0.9900, 55 negative triangles 168: dt=0.9900, 57 negative triangles 169: dt=0.9900, 53 negative triangles 170: dt=0.9900, 56 negative triangles 171: dt=0.9900, 57 negative triangles 172: dt=0.9900, 58 negative triangles 173: dt=0.9900, 53 negative triangles 174: dt=0.9900, 51 negative triangles 175: dt=0.9900, 46 negative triangles 176: dt=0.9900, 48 negative triangles 177: dt=0.9900, 51 negative triangles 178: dt=0.9900, 48 negative triangles 179: dt=0.9900, 53 negative triangles 180: dt=0.9900, 44 negative triangles 181: dt=0.9900, 43 negative triangles 182: dt=0.9900, 40 negative triangles 183: dt=0.9900, 41 negative triangles 184: dt=0.9900, 40 negative triangles 185: dt=0.9900, 40 negative triangles 186: dt=0.9900, 42 negative triangles 187: dt=0.9900, 40 negative triangles 188: dt=0.9900, 44 negative triangles 189: dt=0.9900, 45 negative triangles 190: dt=0.9900, 44 negative triangles 191: dt=0.9900, 46 negative triangles 192: dt=0.9405, 43 negative triangles 193: dt=0.9405, 41 negative triangles 194: dt=0.9405, 42 negative triangles 195: dt=0.9405, 41 negative triangles 196: dt=0.9405, 42 negative triangles 197: dt=0.9405, 46 negative triangles 198: dt=0.9405, 40 negative triangles 199: dt=0.9405, 36 negative triangles 200: dt=0.9405, 37 negative triangles 201: dt=0.9405, 35 negative triangles 202: dt=0.9405, 37 negative triangles 203: dt=0.9405, 33 negative triangles 204: dt=0.9405, 34 negative triangles 205: dt=0.9405, 32 negative triangles 206: dt=0.9405, 33 negative triangles 207: dt=0.9405, 31 negative triangles 208: dt=0.9405, 30 negative triangles 209: dt=0.9405, 32 negative triangles 210: dt=0.9405, 31 negative triangles 211: dt=0.9405, 32 negative triangles 212: dt=0.9405, 32 negative triangles 213: dt=0.9405, 30 negative triangles 214: dt=0.9405, 28 negative triangles 215: dt=0.9405, 27 negative triangles 216: dt=0.9405, 27 negative triangles 217: dt=0.9405, 28 negative triangles 218: dt=0.9405, 26 negative triangles 219: dt=0.9405, 29 negative triangles 220: dt=0.9405, 27 negative triangles 221: dt=0.9405, 25 negative triangles 222: dt=0.9405, 25 negative triangles 223: dt=0.9405, 22 negative triangles 224: dt=0.9405, 22 negative triangles 225: dt=0.9405, 23 negative triangles 226: dt=0.9405, 20 negative triangles 227: dt=0.9405, 21 negative triangles 228: dt=0.9405, 19 negative triangles 229: dt=0.9405, 20 negative triangles 230: dt=0.9405, 19 negative triangles 231: dt=0.9405, 20 negative triangles 232: dt=0.9405, 16 negative triangles 233: dt=0.9405, 15 negative triangles 234: dt=0.9405, 16 negative triangles 235: dt=0.9405, 15 negative triangles 236: dt=0.9405, 15 negative triangles 237: dt=0.9405, 16 negative triangles 238: dt=0.9405, 13 negative triangles 239: dt=0.9405, 11 negative triangles 240: dt=0.9405, 13 negative triangles 241: dt=0.9405, 13 negative triangles 242: dt=0.9405, 12 negative triangles 243: dt=0.9405, 10 negative triangles 244: dt=0.9405, 9 negative triangles 245: dt=0.9405, 11 negative triangles 246: dt=0.9405, 9 negative triangles 247: dt=0.9405, 10 negative triangles 248: dt=0.9405, 9 negative triangles 249: dt=0.9405, 7 negative triangles 250: dt=0.9405, 5 negative triangles 251: dt=0.9405, 5 negative triangles 252: dt=0.9405, 4 negative triangles 253: dt=0.9405, 9 negative triangles 254: dt=0.9405, 8 negative triangles 255: dt=0.9405, 6 negative triangles 256: dt=0.9405, 4 negative triangles 257: dt=0.9405, 5 negative triangles 258: dt=0.9405, 5 negative triangles 259: dt=0.9405, 2 negative triangles 260: dt=0.9405, 2 negative triangles 261: dt=0.9405, 2 negative triangles 262: dt=0.9405, 2 negative triangles 263: dt=0.9405, 2 negative triangles 264: dt=0.9405, 2 negative triangles 265: dt=0.9405, 2 negative triangles 266: dt=0.9405, 2 negative triangles 267: dt=0.9405, 2 negative triangles 268: dt=0.9405, 2 negative triangles 269: dt=0.8935, 2 negative triangles 270: dt=0.8935, 2 negative triangles 271: dt=0.8935, 2 negative triangles 272: dt=0.8935, 2 negative triangles 273: dt=0.8935, 2 negative triangles 274: dt=0.8935, 2 negative triangles 275: dt=0.8935, 2 negative triangles 276: dt=0.8935, 2 negative triangles 277: dt=0.8935, 2 negative triangles 278: dt=0.8935, 2 negative triangles 279: dt=0.8488, 2 negative triangles 280: dt=0.8488, 2 negative triangles 281: dt=0.8488, 2 negative triangles 282: dt=0.8488, 2 negative triangles 283: dt=0.8488, 2 negative triangles 284: dt=0.8488, 2 negative triangles 285: dt=0.8488, 2 negative triangles 286: dt=0.8488, 2 negative triangles 287: dt=0.8488, 2 negative triangles 288: dt=0.8488, 2 negative triangles 289: dt=0.8064, 2 negative triangles 290: dt=0.8064, 2 negative triangles 291: dt=0.8064, 2 negative triangles 292: dt=0.8064, 2 negative triangles 293: dt=0.8064, 2 negative triangles 294: dt=0.8064, 2 negative triangles 295: dt=0.8064, 2 negative triangles 296: dt=0.8064, 2 negative triangles 297: dt=0.8064, 2 negative triangles 298: dt=0.8064, 2 negative triangles 299: dt=0.7660, 2 negative triangles 300: dt=0.7660, 2 negative triangles 301: dt=0.7660, 2 negative triangles 302: dt=0.7660, 2 negative triangles 303: dt=0.7660, 2 negative triangles 304: dt=0.7660, 2 negative triangles 305: dt=0.7660, 2 negative triangles 306: dt=0.7660, 2 negative triangles 307: dt=0.7660, 2 negative triangles 308: dt=0.7660, 2 negative triangles 309: dt=0.7277, 2 negative triangles 310: dt=0.7277, 2 negative triangles 311: dt=0.7277, 2 negative triangles 312: dt=0.7277, 2 negative triangles 313: dt=0.7277, 2 negative triangles 314: dt=0.7277, 2 negative triangles 315: dt=0.7277, 2 negative triangles 316: dt=0.7277, 2 negative triangles 317: dt=0.7277, 2 negative triangles 318: dt=0.7277, 2 negative triangles 319: dt=0.6914, 2 negative triangles 320: dt=0.6914, 2 negative triangles 321: dt=0.6914, 2 negative triangles 322: dt=0.6914, 2 negative triangles 323: dt=0.6914, 2 negative triangles 324: dt=0.6914, 2 negative triangles 325: dt=0.6914, 2 negative triangles 326: dt=0.6914, 2 negative triangles 327: dt=0.6914, 2 negative triangles 328: dt=0.6914, 2 negative triangles 329: dt=0.6568, 2 negative triangles 330: dt=0.6568, 2 negative triangles 331: dt=0.6568, 2 negative triangles 332: dt=0.6568, 2 negative triangles 333: dt=0.6568, 2 negative triangles 334: dt=0.6568, 2 negative triangles 335: dt=0.6568, 2 negative triangles 336: dt=0.6568, 2 negative triangles 337: dt=0.6568, 2 negative triangles 338: dt=0.6568, 2 negative triangles 339: dt=0.6239, 2 negative triangles 340: dt=0.6239, 2 negative triangles 341: dt=0.6239, 2 negative triangles 342: dt=0.6239, 2 negative triangles 343: dt=0.6239, 2 negative triangles 344: dt=0.6239, 2 negative triangles 345: dt=0.6239, 2 negative triangles 346: dt=0.6239, 2 negative triangles 347: dt=0.6239, 2 negative triangles 348: dt=0.6239, 2 negative triangles 349: dt=0.5927, 2 negative triangles 350: dt=0.5927, 2 negative triangles 351: dt=0.5927, 2 negative triangles 352: dt=0.5927, 2 negative triangles 353: dt=0.5927, 2 negative triangles 354: dt=0.5927, 2 negative triangles 355: dt=0.5927, 2 negative triangles 356: dt=0.5927, 2 negative triangles 357: dt=0.5927, 2 negative triangles 358: dt=0.5927, 2 negative triangles 359: dt=0.5631, 2 negative triangles 360: dt=0.5631, 2 negative triangles 361: dt=0.5631, 2 negative triangles 362: dt=0.5631, 2 negative triangles 363: dt=0.5631, 2 negative triangles 364: dt=0.5631, 2 negative triangles 365: dt=0.5631, 2 negative triangles 366: dt=0.5631, 2 negative triangles 367: dt=0.5631, 2 negative triangles 368: dt=0.5631, 2 negative triangles 369: dt=0.5350, 2 negative triangles 370: dt=0.5350, 2 negative triangles 371: dt=0.5350, 2 negative triangles 372: dt=0.5350, 2 negative triangles 373: dt=0.5350, 2 negative triangles 374: dt=0.5350, 2 negative triangles 375: dt=0.5350, 2 negative triangles 376: dt=0.5350, 2 negative triangles 377: dt=0.5350, 2 negative triangles 378: dt=0.5350, 2 negative triangles 379: dt=0.5082, 2 negative triangles 380: dt=0.5082, 2 negative triangles 381: dt=0.5082, 2 negative triangles 382: dt=0.5082, 2 negative triangles 383: dt=0.5082, 2 negative triangles 384: dt=0.5082, 2 negative triangles 385: dt=0.5082, 2 negative triangles 386: dt=0.5082, 2 negative triangles 387: dt=0.5082, 2 negative triangles 388: dt=0.5082, 2 negative triangles 389: dt=0.4828, 2 negative triangles 390: dt=0.4828, 2 negative triangles 391: dt=0.4828, 2 negative triangles 392: dt=0.4828, 2 negative triangles 393: dt=0.4828, 2 negative triangles 394: dt=0.4828, 2 negative triangles 395: dt=0.4828, 2 negative triangles 396: dt=0.4828, 2 negative triangles 397: dt=0.4828, 2 negative triangles 398: dt=0.4828, 2 negative triangles 399: dt=0.4587, 2 negative triangles 400: dt=0.4587, 2 negative triangles 401: dt=0.4587, 2 negative triangles 402: dt=0.4587, 2 negative triangles 403: dt=0.4587, 2 negative triangles 404: dt=0.4587, 2 negative triangles 405: dt=0.4587, 2 negative triangles 406: dt=0.4587, 2 negative triangles 407: dt=0.4587, 2 negative triangles 408: dt=0.4587, 2 negative triangles 409: dt=0.4357, 2 negative triangles 410: dt=0.4357, 2 negative triangles 411: dt=0.4357, 2 negative triangles 412: dt=0.4357, 2 negative triangles 413: dt=0.4357, 2 negative triangles 414: dt=0.4357, 2 negative triangles 415: dt=0.4357, 2 negative triangles 416: dt=0.4357, 2 negative triangles 417: dt=0.4357, 2 negative triangles 418: dt=0.4357, 2 negative triangles 419: dt=0.4139, 2 negative triangles 420: dt=0.4139, 2 negative triangles 421: dt=0.4139, 2 negative triangles 422: dt=0.4139, 2 negative triangles 423: dt=0.4139, 2 negative triangles 424: dt=0.4139, 2 negative triangles 425: dt=0.4139, 2 negative triangles 426: dt=0.4139, 2 negative triangles 427: dt=0.4139, 2 negative triangles 428: dt=0.4139, 2 negative triangles 429: dt=0.3932, 2 negative triangles 430: dt=0.3932, 2 negative triangles 431: dt=0.3932, 2 negative triangles 432: dt=0.3932, 2 negative triangles 433: dt=0.3932, 2 negative triangles 434: dt=0.3932, 2 negative triangles 435: dt=0.3932, 2 negative triangles 436: dt=0.3932, 2 negative triangles 437: dt=0.3932, 2 negative triangles 438: dt=0.3932, 2 negative triangles 439: dt=0.3736, 2 negative triangles 440: dt=0.3736, 2 negative triangles 441: dt=0.3736, 2 negative triangles 442: dt=0.3736, 2 negative triangles 443: dt=0.3736, 2 negative triangles 444: dt=0.3736, 2 negative triangles 445: dt=0.3736, 2 negative triangles 446: dt=0.3736, 2 negative triangles 447: dt=0.3736, 2 negative triangles 448: dt=0.3736, 2 negative triangles 449: dt=0.3549, 2 negative triangles 450: dt=0.3549, 2 negative triangles 451: dt=0.3549, 2 negative triangles 452: dt=0.3549, 2 negative triangles 453: dt=0.3549, 2 negative triangles 454: dt=0.3549, 2 negative triangles 455: dt=0.3549, 2 negative triangles 456: dt=0.3549, 2 negative triangles 457: dt=0.3549, 2 negative triangles 458: dt=0.3549, 2 negative triangles 459: dt=0.3372, 2 negative triangles 460: dt=0.3372, 2 negative triangles 461: dt=0.3372, 2 negative triangles 462: dt=0.3372, 2 negative triangles 463: dt=0.3372, 2 negative triangles 464: dt=0.3372, 2 negative triangles 465: dt=0.3372, 2 negative triangles 466: dt=0.3372, 2 negative triangles 467: dt=0.3372, 2 negative triangles 468: dt=0.3372, 2 negative triangles 469: dt=0.3203, 2 negative triangles 470: dt=0.3203, 2 negative triangles 471: dt=0.3203, 2 negative triangles 472: dt=0.3203, 2 negative triangles 473: dt=0.3203, 2 negative triangles 474: dt=0.3203, 2 negative triangles 475: dt=0.3203, 2 negative triangles 476: dt=0.3203, 2 negative triangles 477: dt=0.3203, 2 negative triangles 478: dt=0.3203, 2 negative triangles 479: dt=0.3043, 2 negative triangles 480: dt=0.3043, 2 negative triangles 481: dt=0.3043, 2 negative triangles 482: dt=0.3043, 2 negative triangles 483: dt=0.3043, 2 negative triangles 484: dt=0.3043, 2 negative triangles 485: dt=0.3043, 2 negative triangles 486: dt=0.3043, 2 negative triangles 487: dt=0.3043, 2 negative triangles 488: dt=0.3043, 2 negative triangles 489: dt=0.2891, 2 negative triangles 490: dt=0.2891, 2 negative triangles 491: dt=0.2891, 2 negative triangles 492: dt=0.2891, 2 negative triangles 493: dt=0.2891, 2 negative triangles 494: dt=0.2891, 2 negative triangles 495: dt=0.2891, 2 negative triangles 496: dt=0.2891, 2 negative triangles 497: dt=0.2891, 2 negative triangles 498: dt=0.2891, 2 negative triangles 499: dt=0.2746, 2 negative triangles 500: dt=0.2746, 2 negative triangles 501: dt=0.2746, 2 negative triangles 502: dt=0.2746, 2 negative triangles 503: dt=0.2746, 2 negative triangles 504: dt=0.2746, 2 negative triangles 505: dt=0.2746, 2 negative triangles 506: dt=0.2746, 2 negative triangles 507: dt=0.2746, 2 negative triangles 508: dt=0.2746, 2 negative triangles 509: dt=0.2609, 2 negative triangles 510: dt=0.2609, 2 negative triangles 511: dt=0.2609, 2 negative triangles 512: dt=0.2609, 2 negative triangles 513: dt=0.2609, 2 negative triangles 514: dt=0.2609, 2 negative triangles 515: dt=0.2609, 2 negative triangles 516: dt=0.2609, 2 negative triangles 517: dt=0.2609, 2 negative triangles 518: dt=0.2609, 2 negative triangles 519: dt=0.2478, 2 negative triangles 520: dt=0.2478, 2 negative triangles 521: dt=0.2478, 2 negative triangles 522: dt=0.2478, 2 negative triangles 523: dt=0.2478, 2 negative triangles 524: dt=0.2478, 2 negative triangles 525: dt=0.2478, 2 negative triangles 526: dt=0.2478, 2 negative triangles 527: dt=0.2478, 2 negative triangles 528: dt=0.2478, 2 negative triangles 529: dt=0.2354, 2 negative triangles 530: dt=0.2354, 2 negative triangles 531: dt=0.2354, 2 negative triangles 532: dt=0.2354, 2 negative triangles 533: dt=0.2354, 2 negative triangles 534: dt=0.2354, 2 negative triangles 535: dt=0.2354, 2 negative triangles 536: dt=0.2354, 2 negative triangles 537: dt=0.2354, 2 negative triangles 538: dt=0.2354, 2 negative triangles 539: dt=0.2237, 2 negative triangles 540: dt=0.2237, 2 negative triangles 541: dt=0.2237, 2 negative triangles 542: dt=0.2237, 2 negative triangles 543: dt=0.2237, 2 negative triangles 544: dt=0.2237, 2 negative triangles 545: dt=0.2237, 2 negative triangles 546: dt=0.2237, 2 negative triangles 547: dt=0.2237, 2 negative triangles 548: dt=0.2237, 2 negative triangles 549: dt=0.2125, 2 negative triangles 550: dt=0.2125, 2 negative triangles 551: dt=0.2125, 2 negative triangles 552: dt=0.2125, 2 negative triangles 553: dt=0.2125, 2 negative triangles 554: dt=0.2125, 2 negative triangles 555: dt=0.2125, 2 negative triangles 556: dt=0.2125, 2 negative triangles 557: dt=0.2125, 2 negative triangles 558: dt=0.2125, 2 negative triangles 559: dt=0.2019, 2 negative triangles 560: dt=0.2019, 2 negative triangles 561: dt=0.2019, 2 negative triangles 562: dt=0.2019, 2 negative triangles 563: dt=0.2019, 2 negative triangles 564: dt=0.2019, 2 negative triangles 565: dt=0.2019, 2 negative triangles 566: dt=0.2019, 2 negative triangles 567: dt=0.2019, 2 negative triangles 568: dt=0.2019, 2 negative triangles 569: dt=0.1918, 2 negative triangles 570: dt=0.1918, 2 negative triangles 571: dt=0.1918, 2 negative triangles 572: dt=0.1918, 2 negative triangles 573: dt=0.1918, 2 negative triangles 574: dt=0.1918, 2 negative triangles 575: dt=0.1918, 2 negative triangles 576: dt=0.1918, 2 negative triangles 577: dt=0.1918, 2 negative triangles 578: dt=0.1918, 2 negative triangles 579: dt=0.1822, 2 negative triangles 580: dt=0.1822, 2 negative triangles 581: dt=0.1822, 2 negative triangles 582: dt=0.1822, 2 negative triangles 583: dt=0.1822, 2 negative triangles 584: dt=0.1822, 2 negative triangles 585: dt=0.1822, 2 negative triangles 586: dt=0.1822, 2 negative triangles 587: dt=0.1822, 2 negative triangles 588: dt=0.1822, 2 negative triangles 589: dt=0.1731, 2 negative triangles 590: dt=0.1731, 2 negative triangles 591: dt=0.1731, 2 negative triangles 592: dt=0.1731, 2 negative triangles 593: dt=0.1731, 2 negative triangles 594: dt=0.1731, 2 negative triangles 595: dt=0.1731, 2 negative triangles 596: dt=0.1731, 2 negative triangles 597: dt=0.1731, 2 negative triangles 598: dt=0.1731, 2 negative triangles 599: dt=0.1644, 2 negative triangles 600: dt=0.1644, 2 negative triangles 601: dt=0.1644, 2 negative triangles 602: dt=0.1644, 2 negative triangles 603: dt=0.1644, 2 negative triangles 604: dt=0.1644, 2 negative triangles 605: dt=0.1644, 2 negative triangles 606: dt=0.1644, 2 negative triangles 607: dt=0.1644, 2 negative triangles 608: dt=0.1644, 2 negative triangles 609: dt=0.1562, 2 negative triangles 610: dt=0.1562, 2 negative triangles 611: dt=0.1562, 2 negative triangles 612: dt=0.1562, 2 negative triangles 613: dt=0.1562, 2 negative triangles 614: dt=0.1562, 2 negative triangles 615: dt=0.1562, 2 negative triangles 616: dt=0.1562, 2 negative triangles 617: dt=0.1562, 2 negative triangles 618: dt=0.1562, 2 negative triangles 619: dt=0.1484, 2 negative triangles 620: dt=0.1484, 2 negative triangles 621: dt=0.1484, 2 negative triangles 622: dt=0.1484, 2 negative triangles 623: dt=0.1484, 2 negative triangles 624: dt=0.1484, 2 negative triangles 625: dt=0.1484, 2 negative triangles 626: dt=0.1484, 2 negative triangles 627: dt=0.1484, 2 negative triangles 628: dt=0.1484, 2 negative triangles 629: dt=0.1410, 2 negative triangles 630: dt=0.1410, 2 negative triangles 631: dt=0.1410, 2 negative triangles 632: dt=0.1410, 2 negative triangles 633: dt=0.1410, 2 negative triangles 634: dt=0.1410, 2 negative triangles 635: dt=0.1410, 2 negative triangles 636: dt=0.1410, 2 negative triangles 637: dt=0.1410, 2 negative triangles 638: dt=0.1410, 2 negative triangles 639: dt=0.1339, 2 negative triangles 640: dt=0.1339, 2 negative triangles 641: dt=0.1339, 2 negative triangles 642: dt=0.1339, 2 negative triangles 643: dt=0.1339, 2 negative triangles 644: dt=0.1339, 2 negative triangles 645: dt=0.1339, 2 negative triangles 646: dt=0.1339, 2 negative triangles 647: dt=0.1339, 2 negative triangles 648: dt=0.1339, 2 negative triangles 649: dt=0.1272, 2 negative triangles 650: dt=0.1272, 2 negative triangles 651: dt=0.1272, 2 negative triangles 652: dt=0.1272, 2 negative triangles 653: dt=0.1272, 2 negative triangles 654: dt=0.1272, 2 negative triangles 655: dt=0.1272, 2 negative triangles 656: dt=0.1272, 2 negative triangles 657: dt=0.1272, 2 negative triangles 658: dt=0.1272, 2 negative triangles 659: dt=0.1209, 2 negative triangles 660: dt=0.1209, 2 negative triangles 661: dt=0.1209, 2 negative triangles 662: dt=0.1209, 2 negative triangles 663: dt=0.1209, 2 negative triangles 664: dt=0.1209, 2 negative triangles 665: dt=0.1209, 2 negative triangles 666: dt=0.1209, 2 negative triangles 667: dt=0.1209, 2 negative triangles 668: dt=0.1209, 2 negative triangles 669: dt=0.1148, 2 negative triangles 670: dt=0.1148, 2 negative triangles 671: dt=0.1148, 2 negative triangles 672: dt=0.1148, 2 negative triangles 673: dt=0.1148, 2 negative triangles 674: dt=0.1148, 2 negative triangles 675: dt=0.1148, 2 negative triangles 676: dt=0.1148, 2 negative triangles 677: dt=0.1148, 2 negative triangles 678: dt=0.1148, 2 negative triangles 679: dt=0.1091, 2 negative triangles 680: dt=0.1091, 2 negative triangles 681: dt=0.1091, 2 negative triangles 682: dt=0.1091, 2 negative triangles 683: dt=0.1091, 2 negative triangles 684: dt=0.1091, 2 negative triangles 685: dt=0.1091, 2 negative triangles 686: dt=0.1091, 2 negative triangles 687: dt=0.1091, 2 negative triangles 688: dt=0.1091, 2 negative triangles 689: dt=0.1036, 2 negative triangles 690: dt=0.1036, 2 negative triangles 691: dt=0.1036, 2 negative triangles 692: dt=0.1036, 2 negative triangles 693: dt=0.1036, 2 negative triangles 694: dt=0.1036, 2 negative triangles 695: dt=0.1036, 2 negative triangles 696: dt=0.1036, 2 negative triangles 697: dt=0.1036, 2 negative triangles 698: dt=0.1036, 2 negative triangles 699: dt=0.0984, 2 negative triangles 700: dt=0.0984, 2 negative triangles 701: dt=0.0984, 2 negative triangles 702: dt=0.0984, 2 negative triangles 703: dt=0.0984, 2 negative triangles 704: dt=0.0984, 2 negative triangles 705: dt=0.0984, 2 negative triangles 706: dt=0.0984, 2 negative triangles 707: dt=0.0984, 2 negative triangles 708: dt=0.0984, 2 negative triangles 709: dt=0.0935, 2 negative triangles 710: dt=0.0935, 2 negative triangles 711: dt=0.0935, 2 negative triangles 712: dt=0.0935, 2 negative triangles 713: dt=0.0935, 2 negative triangles 714: dt=0.0935, 2 negative triangles 715: dt=0.0935, 2 negative triangles 716: dt=0.0935, 2 negative triangles 717: dt=0.0935, 2 negative triangles 718: dt=0.0935, 2 negative triangles 719: dt=0.0888, 2 negative triangles 720: dt=0.0888, 2 negative triangles 721: dt=0.0888, 2 negative triangles 722: dt=0.0888, 2 negative triangles 723: dt=0.0888, 2 negative triangles 724: dt=0.0888, 2 negative triangles 725: dt=0.0888, 2 negative triangles 726: dt=0.0888, 2 negative triangles 727: dt=0.0888, 2 negative triangles 728: dt=0.0888, 2 negative triangles 729: dt=0.0844, 2 negative triangles 730: dt=0.0844, 2 negative triangles 731: dt=0.0844, 2 negative triangles 732: dt=0.0844, 2 negative triangles 733: dt=0.0844, 2 negative triangles 734: dt=0.0844, 2 negative triangles 735: dt=0.0844, 2 negative triangles 736: dt=0.0844, 2 negative triangles 737: dt=0.0844, 2 negative triangles 738: dt=0.0844, 2 negative triangles 739: dt=0.0802, 2 negative triangles 740: dt=0.0802, 2 negative triangles 741: dt=0.0802, 2 negative triangles 742: dt=0.0802, 2 negative triangles 743: dt=0.0802, 2 negative triangles 744: dt=0.0802, 2 negative triangles 745: dt=0.0802, 2 negative triangles 746: dt=0.0802, 2 negative triangles 747: dt=0.0802, 2 negative triangles 748: dt=0.0802, 2 negative triangles 749: dt=0.0762, 2 negative triangles 750: dt=0.0762, 2 negative triangles 751: dt=0.0762, 2 negative triangles 752: dt=0.0762, 2 negative triangles 753: dt=0.0762, 2 negative triangles 754: dt=0.0762, 2 negative triangles 755: dt=0.0762, 2 negative triangles 756: dt=0.0762, 2 negative triangles 757: dt=0.0762, 2 negative triangles 758: dt=0.0762, 2 negative triangles 759: dt=0.0724, 2 negative triangles 760: dt=0.0724, 2 negative triangles 761: dt=0.0724, 2 negative triangles 762: dt=0.0724, 2 negative triangles 763: dt=0.0724, 2 negative triangles 764: dt=0.0724, 2 negative triangles 765: dt=0.0724, 2 negative triangles 766: dt=0.0724, 2 negative triangles 767: dt=0.0724, 2 negative triangles 768: dt=0.0724, 2 negative triangles 769: dt=0.0687, 2 negative triangles 770: dt=0.0687, 2 negative triangles 771: dt=0.0687, 2 negative triangles 772: dt=0.0687, 2 negative triangles 773: dt=0.0687, 2 negative triangles 774: dt=0.0687, 2 negative triangles 775: dt=0.0687, 2 negative triangles 776: dt=0.0687, 2 negative triangles 777: dt=0.0687, 2 negative triangles 778: dt=0.0687, 2 negative triangles 779: dt=0.0653, 2 negative triangles 780: dt=0.0653, 2 negative triangles 781: dt=0.0653, 2 negative triangles 782: dt=0.0653, 2 negative triangles 783: dt=0.0653, 2 negative triangles 784: dt=0.0653, 2 negative triangles 785: dt=0.0653, 2 negative triangles 786: dt=0.0653, 2 negative triangles 787: dt=0.0653, 2 negative triangles 788: dt=0.0653, 2 negative triangles 789: dt=0.0620, 2 negative triangles 790: dt=0.0620, 2 negative triangles 791: dt=0.0620, 2 negative triangles 792: dt=0.0620, 2 negative triangles 793: dt=0.0620, 2 negative triangles 794: dt=0.0620, 2 negative triangles 795: dt=0.0620, 2 negative triangles 796: dt=0.0620, 2 negative triangles 797: dt=0.0620, 2 negative triangles 798: dt=0.0620, 2 negative triangles 799: dt=0.0589, 2 negative triangles 800: dt=0.0589, 2 negative triangles 801: dt=0.0589, 2 negative triangles 802: dt=0.0589, 2 negative triangles 803: dt=0.0589, 2 negative triangles 804: dt=0.0589, 2 negative triangles 805: dt=0.0589, 2 negative triangles 806: dt=0.0589, 2 negative triangles 807: dt=0.0589, 2 negative triangles 808: dt=0.0589, 2 negative triangles 809: dt=0.0560, 2 negative triangles 810: dt=0.0560, 2 negative triangles 811: dt=0.0560, 2 negative triangles 812: dt=0.0560, 2 negative triangles 813: dt=0.0560, 2 negative triangles 814: dt=0.0560, 2 negative triangles 815: dt=0.0560, 2 negative triangles 816: dt=0.0560, 2 negative triangles 817: dt=0.0560, 2 negative triangles 818: dt=0.0560, 2 negative triangles 819: dt=0.0532, 2 negative triangles 820: dt=0.0532, 2 negative triangles 821: dt=0.0532, 2 negative triangles 822: dt=0.0532, 2 negative triangles 823: dt=0.0532, 2 negative triangles 824: dt=0.0532, 2 negative triangles 825: dt=0.0532, 2 negative triangles 826: dt=0.0532, 2 negative triangles 827: dt=0.0532, 2 negative triangles 828: dt=0.0532, 2 negative triangles 829: dt=0.0505, 2 negative triangles 830: dt=0.0505, 2 negative triangles 831: dt=0.0505, 2 negative triangles 832: dt=0.0505, 2 negative triangles 833: dt=0.0505, 2 negative triangles 834: dt=0.0505, 2 negative triangles 835: dt=0.0505, 2 negative triangles 836: dt=0.0505, 2 negative triangles 837: dt=0.0505, 2 negative triangles 838: dt=0.0505, 2 negative triangles 839: dt=0.0480, 2 negative triangles 840: dt=0.0480, 2 negative triangles 841: dt=0.0480, 2 negative triangles 842: dt=0.0480, 2 negative triangles 843: dt=0.0480, 2 negative triangles 844: dt=0.0480, 2 negative triangles 845: dt=0.0480, 2 negative triangles 846: dt=0.0480, 2 negative triangles 847: dt=0.0480, 2 negative triangles 848: dt=0.0480, 2 negative triangles 849: dt=0.0456, 2 negative triangles 850: dt=0.0456, 2 negative triangles 851: dt=0.0456, 2 negative triangles 852: dt=0.0456, 2 negative triangles 853: dt=0.0456, 2 negative triangles 854: dt=0.0456, 2 negative triangles 855: dt=0.0456, 2 negative triangles 856: dt=0.0456, 2 negative triangles 857: dt=0.0456, 2 negative triangles 858: dt=0.0456, 2 negative triangles 859: dt=0.0433, 2 negative triangles 860: dt=0.0433, 2 negative triangles 861: dt=0.0433, 2 negative triangles 862: dt=0.0433, 2 negative triangles 863: dt=0.0433, 2 negative triangles 864: dt=0.0433, 2 negative triangles 865: dt=0.0433, 2 negative triangles 866: dt=0.0433, 2 negative triangles 867: dt=0.0433, 2 negative triangles 868: dt=0.0433, 2 negative triangles 869: dt=0.0412, 2 negative triangles 870: dt=0.0412, 2 negative triangles 871: dt=0.0412, 2 negative triangles 872: dt=0.0412, 2 negative triangles 873: dt=0.0412, 2 negative triangles 874: dt=0.0412, 2 negative triangles 875: dt=0.0412, 2 negative triangles 876: dt=0.0412, 2 negative triangles 877: dt=0.0412, 2 negative triangles 878: dt=0.0412, 2 negative triangles 879: dt=0.0391, 2 negative triangles 880: dt=0.0391, 2 negative triangles 881: dt=0.0391, 2 negative triangles 882: dt=0.0391, 2 negative triangles 883: dt=0.0391, 2 negative triangles 884: dt=0.0391, 2 negative triangles 885: dt=0.0391, 2 negative triangles 886: dt=0.0391, 2 negative triangles 887: dt=0.0391, 2 negative triangles 888: dt=0.0391, 2 negative triangles 889: dt=0.0371, 2 negative triangles 890: dt=0.0371, 2 negative triangles 891: dt=0.0371, 2 negative triangles 892: dt=0.0371, 2 negative triangles 893: dt=0.0371, 2 negative triangles 894: dt=0.0371, 2 negative triangles 895: dt=0.0371, 2 negative triangles 896: dt=0.0371, 2 negative triangles 897: dt=0.0371, 2 negative triangles 898: dt=0.0371, 2 negative triangles 899: dt=0.0353, 2 negative triangles 900: dt=0.0353, 2 negative triangles 901: dt=0.0353, 2 negative triangles 902: dt=0.0353, 2 negative triangles 903: dt=0.0353, 2 negative triangles 904: dt=0.0353, 2 negative triangles 905: dt=0.0353, 2 negative triangles 906: dt=0.0353, 2 negative triangles 907: dt=0.0353, 2 negative triangles 908: dt=0.0353, 2 negative triangles 909: dt=0.0335, 2 negative triangles 910: dt=0.0335, 2 negative triangles 911: dt=0.0335, 2 negative triangles 912: dt=0.0335, 2 negative triangles 913: dt=0.0335, 2 negative triangles 914: dt=0.0335, 2 negative triangles 915: dt=0.0335, 2 negative triangles 916: dt=0.0335, 2 negative triangles 917: dt=0.0335, 2 negative triangles 918: dt=0.0335, 2 negative triangles 919: dt=0.0319, 2 negative triangles 920: dt=0.0319, 2 negative triangles 921: dt=0.0319, 2 negative triangles 922: dt=0.0319, 2 negative triangles 923: dt=0.0319, 2 negative triangles 924: dt=0.0319, 2 negative triangles 925: dt=0.0319, 2 negative triangles 926: dt=0.0319, 2 negative triangles 927: dt=0.0319, 2 negative triangles 928: dt=0.0319, 2 negative triangles 929: dt=0.0303, 2 negative triangles 930: dt=0.0303, 2 negative triangles 931: dt=0.0303, 2 negative triangles 932: dt=0.0303, 2 negative triangles 933: dt=0.0303, 2 negative triangles 934: dt=0.0303, 2 negative triangles 935: dt=0.0303, 2 negative triangles 936: dt=0.0303, 2 negative triangles 937: dt=0.0303, 2 negative triangles 938: dt=0.0303, 2 negative triangles 939: dt=0.0287, 2 negative triangles 940: dt=0.0287, 2 negative triangles 941: dt=0.0287, 2 negative triangles 942: dt=0.0287, 2 negative triangles 943: dt=0.0287, 2 negative triangles 944: dt=0.0287, 2 negative triangles 945: dt=0.0287, 2 negative triangles 946: dt=0.0287, 2 negative triangles 947: dt=0.0287, 2 negative triangles 948: dt=0.0287, 2 negative triangles 949: dt=0.0273, 2 negative triangles 950: dt=0.0273, 2 negative triangles 951: dt=0.0273, 2 negative triangles 952: dt=0.0273, 2 negative triangles 953: dt=0.0273, 2 negative triangles 954: dt=0.0273, 2 negative triangles 955: dt=0.0273, 2 negative triangles 956: dt=0.0273, 2 negative triangles 957: dt=0.0273, 2 negative triangles 958: dt=0.0273, 2 negative triangles 959: dt=0.0259, 2 negative triangles 960: dt=0.0259, 2 negative triangles 961: dt=0.0259, 2 negative triangles 962: dt=0.0259, 2 negative triangles 963: dt=0.0259, 2 negative triangles 964: dt=0.0259, 2 negative triangles 965: dt=0.0259, 2 negative triangles 966: dt=0.0259, 2 negative triangles 967: dt=0.0259, 2 negative triangles 968: dt=0.0259, 2 negative triangles 969: dt=0.0246, 2 negative triangles 970: dt=0.0246, 2 negative triangles 971: dt=0.0246, 2 negative triangles 972: dt=0.0246, 2 negative triangles 973: dt=0.0246, 2 negative triangles 974: dt=0.0246, 2 negative triangles 975: dt=0.0246, 2 negative triangles 976: dt=0.0246, 2 negative triangles 977: dt=0.0246, 2 negative triangles 978: dt=0.0246, 2 negative triangles 979: dt=0.0234, 2 negative triangles 980: dt=0.0234, 2 negative triangles 981: dt=0.0234, 2 negative triangles 982: dt=0.0234, 2 negative triangles 983: dt=0.0234, 2 negative triangles 984: dt=0.0234, 2 negative triangles 985: dt=0.0234, 2 negative triangles 986: dt=0.0234, 2 negative triangles 987: dt=0.0234, 2 negative triangles 988: dt=0.0234, 2 negative triangles 989: dt=0.0222, 2 negative triangles 990: dt=0.0222, 2 negative triangles 991: dt=0.0222, 2 negative triangles 992: dt=0.0222, 2 negative triangles 993: dt=0.0222, 2 negative triangles 994: dt=0.0222, 2 negative triangles 995: dt=0.0222, 2 negative triangles 996: dt=0.0222, 2 negative triangles 997: dt=0.0222, 2 negative triangles 998: dt=0.0222, 2 negative triangles 999: dt=0.0211, 2 negative triangles 1000: dt=0.0211, 2 negative triangles 1001: dt=0.0211, 2 negative triangles 1002: dt=0.0211, 2 negative triangles 1003: dt=0.0211, 2 negative triangles 1004: dt=0.0211, 2 negative triangles 1005: dt=0.0211, 2 negative triangles 1006: dt=0.0211, 2 negative triangles 1007: dt=0.0211, 2 negative triangles 1008: dt=0.0211, 2 negative triangles 1009: dt=0.0201, 2 negative triangles 1010: dt=0.0201, 2 negative triangles 1011: dt=0.0201, 2 negative triangles 1012: dt=0.0201, 2 negative triangles 1013: dt=0.0201, 2 negative triangles 1014: dt=0.0201, 2 negative triangles 1015: dt=0.0201, 2 negative triangles 1016: dt=0.0201, 2 negative triangles 1017: dt=0.0201, 2 negative triangles 1018: dt=0.0201, 2 negative triangles 1019: dt=0.0191, 2 negative triangles 1020: dt=0.0191, 2 negative triangles 1021: dt=0.0191, 2 negative triangles 1022: dt=0.0191, 2 negative triangles 1023: dt=0.0191, 2 negative triangles 1024: dt=0.0191, 2 negative triangles 1025: dt=0.0191, 2 negative triangles 1026: dt=0.0191, 2 negative triangles 1027: dt=0.0191, 2 negative triangles 1028: dt=0.0191, 2 negative triangles 1029: dt=0.0181, 2 negative triangles 1030: dt=0.0181, 2 negative triangles 1031: dt=0.0181, 2 negative triangles 1032: dt=0.0181, 2 negative triangles 1033: dt=0.0181, 2 negative triangles 1034: dt=0.0181, 2 negative triangles 1035: dt=0.0181, 2 negative triangles 1036: dt=0.0181, 2 negative triangles 1037: dt=0.0181, 2 negative triangles 1038: dt=0.0181, 2 negative triangles 1039: dt=0.0172, 2 negative triangles 1040: dt=0.0172, 2 negative triangles 1041: dt=0.0172, 2 negative triangles 1042: dt=0.0172, 2 negative triangles 1043: dt=0.0172, 2 negative triangles 1044: dt=0.0172, 2 negative triangles 1045: dt=0.0172, 2 negative triangles 1046: dt=0.0172, 2 negative triangles 1047: dt=0.0172, 2 negative triangles 1048: dt=0.0172, 2 negative triangles 1049: dt=0.0164, 2 negative triangles 1050: dt=0.0164, 2 negative triangles 1051: dt=0.0164, 2 negative triangles 1052: dt=0.0164, 2 negative triangles 1053: dt=0.0164, 2 negative triangles 1054: dt=0.0164, 2 negative triangles 1055: dt=0.0164, 2 negative triangles 1056: dt=0.0164, 2 negative triangles 1057: dt=0.0164, 2 negative triangles 1058: dt=0.0164, 2 negative triangles 1059: dt=0.0155, 2 negative triangles 1060: dt=0.0155, 2 negative triangles 1061: dt=0.0155, 2 negative triangles 1062: dt=0.0155, 2 negative triangles 1063: dt=0.0155, 2 negative triangles 1064: dt=0.0155, 2 negative triangles 1065: dt=0.0155, 2 negative triangles 1066: dt=0.0155, 2 negative triangles 1067: dt=0.0155, 2 negative triangles 1068: dt=0.0155, 2 negative triangles 1069: dt=0.0148, 2 negative triangles 1070: dt=0.0148, 2 negative triangles 1071: dt=0.0148, 2 negative triangles 1072: dt=0.0148, 2 negative triangles 1073: dt=0.0148, 2 negative triangles 1074: dt=0.0148, 2 negative triangles 1075: dt=0.0148, 2 negative triangles 1076: dt=0.0148, 2 negative triangles 1077: dt=0.0148, 2 negative triangles 1078: dt=0.0148, 2 negative triangles 1079: dt=0.0140, 2 negative triangles 1080: dt=0.0140, 2 negative triangles 1081: dt=0.0140, 2 negative triangles 1082: dt=0.0140, 2 negative triangles 1083: dt=0.0140, 2 negative triangles 1084: dt=0.0140, 2 negative triangles 1085: dt=0.0140, 2 negative triangles 1086: dt=0.0140, 2 negative triangles 1087: dt=0.0140, 2 negative triangles 1088: dt=0.0140, 2 negative triangles 1089: dt=0.0133, 2 negative triangles 1090: dt=0.0133, 2 negative triangles 1091: dt=0.0133, 2 negative triangles 1092: dt=0.0133, 2 negative triangles 1093: dt=0.0133, 2 negative triangles 1094: dt=0.0133, 2 negative triangles 1095: dt=0.0133, 2 negative triangles 1096: dt=0.0133, 2 negative triangles 1097: dt=0.0133, 2 negative triangles 1098: dt=0.0133, 2 negative triangles 1099: dt=0.0127, 2 negative triangles 1100: dt=0.0127, 2 negative triangles 1101: dt=0.0127, 2 negative triangles 1102: dt=0.0127, 2 negative triangles 1103: dt=0.0127, 2 negative triangles 1104: dt=0.0127, 2 negative triangles 1105: dt=0.0127, 2 negative triangles 1106: dt=0.0127, 2 negative triangles 1107: dt=0.0127, 2 negative triangles 1108: dt=0.0127, 2 negative triangles 1109: dt=0.0120, 2 negative triangles 1110: dt=0.0120, 2 negative triangles 1111: dt=0.0120, 2 negative triangles writing registered surface to ../surf/rh.sphere.reg... 1112: dt=0.0120, 2 negative triangles 1113: 2 negative triangles registration took 0.74 hours mris_register utimesec 13086.729294 mris_register stimesec 110.816368 mris_register ru_maxrss 398756 mris_register ru_ixrss 0 mris_register ru_idrss 0 mris_register ru_isrss 0 mris_register ru_minflt 44327510 mris_register ru_majflt 0 mris_register ru_nswap 0 mris_register ru_inblock 5582 mris_register ru_oublock 15376 mris_register ru_msgsnd 0 mris_register ru_msgrcv 0 mris_register ru_nsignals 0 mris_register ru_nvcsw 350645 mris_register ru_nivcsw 25197 FSRUNTIME@ mris_register 0.7430 hours 1 threads #-------------------------------------------- #@# Jacobian white rh Tue May 25 23:09:53 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_jacobian ../surf/rh.white.preaparc ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white.preaparc... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Tue May 25 23:09:56 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mrisp_paint -a 5 /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /opt/freesurfer/average/rh.folding.atlas.acfb40.noaparc.i12.2016-08-02.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Tue May 25 23:09:58 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-05 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.004 0 singular and 309 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1877 labels changed using aseg relabeling using gibbs priors... 000: 4110 changed, 218501 examined... 001: 1005 changed, 17244 examined... 002: 246 changed, 5594 examined... 003: 101 changed, 1537 examined... 004: 33 changed, 595 examined... 005: 11 changed, 187 examined... 006: 7 changed, 76 examined... 007: 4 changed, 34 examined... 008: 1 changed, 23 examined... 009: 0 changed, 7 examined... 188 labels changed using aseg 000: 122 total segments, 84 labels (632 vertices) changed 001: 41 total segments, 4 labels (5 vertices) changed 002: 37 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 2 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 2793 vertices marked for relabeling... 2793 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 17 seconds. #-------------------------------------------- #@# Make Pial Surf rh Tue May 25 23:10:15 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_make_surfaces -orig_white white.preaparc -orig_pial white.preaparc -aseg ../mri/aseg.presurf -mgz -T1 brain.finalsurfs sub-05 rh using white.preaparc starting white location... using white.preaparc starting pial locations... using aseg volume ../mri/aseg.presurf to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/filled.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/brain.finalsurfs.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/../mri/aseg.presurf.mgz... reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... 43249 bright wm thresholded. 3 bright non-wm voxels segmented. reading original surface position from /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.orig... computing class statistics... border white: 444408 voxels (1.36%) border gray 456912 voxels (1.39%) WM (103.0): 102.4 +- 6.3 [70.0 --> 110.0] GM (83.0) : 81.8 +- 10.0 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 67.0 (was 70) setting MAX_BORDER_WHITE to 114.3 (was 105) setting MIN_BORDER_WHITE to 77.0 (was 85) setting MAX_CSF to 57.0 (was 40) setting MAX_GRAY to 101.7 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 67.0 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 47.0 (was 40) spring scale = 1.25 using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=108+-3.5, GM=77+-8.7 mean inside = 100.5, mean outside = 83.5 smoothing surface for 5 iterations... reading initial white vertex positions from white.preaparc... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary smoothing T1 volume with sigma = 2.000 vertex spacing 0.70 +- 0.19 (0.03-->3.91) (max @ vno 151833 --> 151834) face area 0.20 +- 0.09 (0.00-->2.46) mean absolute distance = 1.33 +- 1.40 6619 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 27 points - only 0.00% unknown deleting segment 2 with 350 points - only 0.00% unknown deleting segment 3 with 69 points - only 0.00% unknown deleting segment 4 with 77 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 3 points - only 0.00% unknown deleting segment 6 with 23 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 7 with 3 points - only 0.00% unknown mean border=95.4, 202 (202) missing vertices, mean dist -0.5 [2.3 (%38.9)->0.6 (%61.1))] %43 local maxima, %40 large gradients and %12 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=blg43, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.71 +- 0.19 (0.05-->3.58) (max @ vno 107648 --> 109095) face area 0.20 +- 0.10 (0.00-->2.38) mean absolute distance = 0.58 +- 0.78 6943 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=2323816.0, rms=5.620 001: dt: 0.5000, sse=1411460.6, rms=3.026 (46.154%) 002: dt: 0.5000, sse=1290249.0, rms=2.548 (15.801%) rms = 2.56, time step reduction 1 of 3 to 0.250... 003: dt: 0.2500, sse=1155459.5, rms=1.771 (30.477%) 004: dt: 0.2500, sse=1102864.2, rms=1.323 (25.320%) 005: dt: 0.2500, sse=1078505.9, rms=1.213 (8.345%) 006: dt: 0.2500, sse=1075464.9, rms=1.157 (4.586%) rms = 1.14, time step reduction 2 of 3 to 0.125... 007: dt: 0.2500, sse=1108936.6, rms=1.138 (1.625%) rms = 1.11, time step reduction 3 of 3 to 0.062... 008: dt: 0.1250, sse=1070413.0, rms=1.113 (2.245%) positioning took 1.1 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 29 points - only 0.00% unknown deleting segment 1 with 344 points - only 0.00% unknown deleting segment 2 with 61 points - only 0.00% unknown deleting segment 3 with 66 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 0.00% unknown deleting segment 5 with 20 points - only 0.00% unknown deleting segment 6 with 29 points - only 0.00% unknown deleting segment 7 with 14 points - only 0.00% unknown mean border=94.6, 155 (53) missing vertices, mean dist -0.1 [0.9 (%38.5)->0.3 (%61.5))] %81 local maxima, %12 large gradients and % 3 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=blg43, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.70 +- 0.19 (0.02-->3.51) (max @ vno 107648 --> 109095) face area 0.21 +- 0.10 (0.00-->2.53) mean absolute distance = 0.33 +- 0.57 8738 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1793635.6, rms=4.223 009: dt: 0.5000, sse=1346139.0, rms=2.620 (37.951%) 010: dt: 0.5000, sse=1312610.0, rms=2.531 (3.400%) rms = 2.75, time step reduction 1 of 3 to 0.250... 011: dt: 0.2500, sse=1151665.9, rms=1.614 (36.217%) 012: dt: 0.2500, sse=1105430.5, rms=1.127 (30.179%) 013: dt: 0.2500, sse=1117427.5, rms=1.015 (9.928%) rms = 0.99, time step reduction 2 of 3 to 0.125... 014: dt: 0.2500, sse=1090823.6, rms=0.987 (2.809%) rms = 0.95, time step reduction 3 of 3 to 0.062... 015: dt: 0.1250, sse=1082036.1, rms=0.945 (4.183%) positioning took 1.0 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 29 points - only 0.00% unknown deleting segment 1 with 254 points - only 0.00% unknown deleting segment 2 with 6 points - only 0.00% unknown deleting segment 3 with 33 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 4 with 3 points - only 0.00% unknown deleting segment 5 with 13 points - only 0.00% unknown deleting segment 6 with 37 points - only 0.00% unknown deleting segment 7 with 9 points - only 0.00% unknown mean border=94.7, 126 (23) missing vertices, mean dist -0.1 [0.5 (%38.9)->0.2 (%61.1))] %90 local maxima, % 4 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=blg43, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.70 +- 0.19 (0.05-->3.53) (max @ vno 133505 --> 134973) face area 0.20 +- 0.09 (0.00-->2.46) mean absolute distance = 0.25 +- 0.44 6438 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=1228362.2, rms=2.276 016: dt: 0.5000, sse=1186384.0, rms=1.970 (13.447%) rms = 2.29, time step reduction 1 of 3 to 0.250... 017: dt: 0.2500, sse=1076824.6, rms=1.292 (34.397%) 018: dt: 0.2500, sse=1059553.1, rms=1.000 (22.604%) 019: dt: 0.2500, sse=1049851.5, rms=0.946 (5.422%) rms = 0.93, time step reduction 2 of 3 to 0.125... 020: dt: 0.2500, sse=1054757.0, rms=0.929 (1.802%) rms = 0.90, time step reduction 3 of 3 to 0.062... 021: dt: 0.1250, sse=1049645.6, rms=0.896 (3.477%) positioning took 0.8 minutes inhibiting deformation at non-cortical midline structures... deleting segment 0 with 26 points - only 0.00% unknown deleting segment 1 with 255 points - only 0.00% unknown deleting segment 2 with 33 points - only 0.00% unknown deleting segment 3 with 13 points - only 0.00% unknown deleting segment 4 with 23 points - only 0.00% unknown deleting segment 5 with 9 points - only 0.00% unknown mean border=94.4, 149 (10) missing vertices, mean dist -0.0 [0.4 (%33.6)->0.2 (%66.4))] %92 local maxima, % 3 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=blg43, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=1109538.5, rms=1.518 022: dt: 0.5000, sse=1094355.6, rms=1.405 (7.428%) rms = 1.89, time step reduction 1 of 3 to 0.250... 023: dt: 0.2500, sse=1036117.7, rms=0.900 (35.923%) 024: dt: 0.2500, sse=1038519.7, rms=0.784 (12.861%) rms = 0.75, time step reduction 2 of 3 to 0.125... 025: dt: 0.2500, sse=1039394.8, rms=0.747 (4.783%) rms = 0.72, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=1052235.0, rms=0.723 (3.200%) positioning took 0.7 minutes generating cortex label... 19 non-cortical segments detected only using segment with 11364 vertices erasing segment 1 (vno[0] = 130567) erasing segment 2 (vno[0] = 151930) erasing segment 3 (vno[0] = 154463) erasing segment 4 (vno[0] = 154465) erasing segment 5 (vno[0] = 154633) erasing segment 6 (vno[0] = 157284) erasing segment 7 (vno[0] = 158676) erasing segment 8 (vno[0] = 160190) erasing segment 9 (vno[0] = 160252) erasing segment 10 (vno[0] = 161790) erasing segment 11 (vno[0] = 162970) erasing segment 12 (vno[0] = 163033) erasing segment 13 (vno[0] = 163090) erasing segment 14 (vno[0] = 164297) erasing segment 15 (vno[0] = 168180) erasing segment 16 (vno[0] = 169350) erasing segment 17 (vno[0] = 172441) erasing segment 18 (vno[0] = 218395) writing cortex label to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label... writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.curv writing smoothed area to rh.area writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.area vertex spacing 0.70 +- 0.19 (0.02-->3.91) (max @ vno 151833 --> 151834) face area 0.20 +- 0.09 (0.00-->2.45) repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 0 with 11 points - only 0.00% unknown deleting segment 1 with 21 points - only 0.00% unknown deleting segment 2 with 6 points - only 0.00% unknown deleting segment 4 with 38 points - only 0.00% unknown deleting segment 5 with 32 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 8 with 14 points - only 0.00% unknown deleting segment 9 with 6 points - only 0.00% unknown smoothing surface for 5 iterations... reading initial pial vertex positions from white.preaparc... mean border=74.1, 226 (226) missing vertices, mean dist 0.8 [0.2 (%0.0)->1.3 (%100.0))] %19 local maxima, %41 large gradients and %35 min vals, 128 gradients ignored perforing initial smooth deformation to move away from white surface tol=1.0e-04, sigma=2.0, host=blg43, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=19900418.0, rms=21.324 001: dt: 0.0500, sse=15808379.0, rms=18.876 (11.478%) 002: dt: 0.0500, sse=13602010.0, rms=17.414 (7.747%) 003: dt: 0.0500, sse=12154330.0, rms=16.383 (5.918%) 004: dt: 0.0500, sse=11093354.0, rms=15.584 (4.875%) 005: dt: 0.0500, sse=10260425.0, rms=14.927 (4.217%) 006: dt: 0.0500, sse=9573916.0, rms=14.363 (3.781%) 007: dt: 0.0500, sse=8989659.0, rms=13.864 (3.471%) 008: dt: 0.0500, sse=8480493.0, rms=13.415 (3.244%) 009: dt: 0.0500, sse=8029163.0, rms=13.003 (3.070%) 010: dt: 0.0500, sse=7624273.0, rms=12.622 (2.930%) positioning took 1.2 minutes mean border=69.2, 137 (102) missing vertices, mean dist 0.8 [0.1 (%0.0)->1.3 (%100.0))] %20 local maxima, %41 large gradients and %34 min vals, 201 gradients ignored tol=1.0e-04, sigma=2.0, host=blg43, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=14778081.0, rms=18.204 011: dt: 0.0500, sse=14222787.0, rms=17.833 (2.040%) 012: dt: 0.0500, sse=13726339.0, rms=17.494 (1.899%) 013: dt: 0.0500, sse=13279286.0, rms=17.183 (1.777%) 014: dt: 0.0500, sse=12874232.0, rms=16.896 (1.668%) 015: dt: 0.0500, sse=12504554.0, rms=16.630 (1.575%) 016: dt: 0.0500, sse=12164288.0, rms=16.381 (1.496%) 017: dt: 0.0500, sse=11848848.0, rms=16.147 (1.430%) 018: dt: 0.0500, sse=11551017.0, rms=15.923 (1.390%) 019: dt: 0.0500, sse=11264421.0, rms=15.704 (1.375%) 020: dt: 0.0500, sse=10986063.0, rms=15.488 (1.372%) positioning took 1.1 minutes mean border=67.6, 150 (78) missing vertices, mean dist 0.8 [0.1 (%0.2)->1.3 (%99.8))] %20 local maxima, %41 large gradients and %34 min vals, 251 gradients ignored tol=1.0e-04, sigma=2.0, host=blg43, nav=16, nbrs=2, l_surf_repulse=1.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.05 000: dt: 0.0000, sse=12226833.0, rms=16.431 021: dt: 0.0500, sse=11903856.0, rms=16.192 (1.457%) 022: dt: 0.0500, sse=11597092.0, rms=15.961 (1.426%) 023: dt: 0.0500, sse=11305826.0, rms=15.738 (1.393%) 024: dt: 0.0500, sse=11028178.0, rms=15.523 (1.366%) 025: dt: 0.0500, sse=10762101.0, rms=15.314 (1.346%) 026: dt: 0.0500, sse=10504478.0, rms=15.109 (1.340%) 027: dt: 0.0500, sse=10254142.0, rms=14.907 (1.338%) 028: dt: 0.0500, sse=10009373.0, rms=14.707 (1.344%) 029: dt: 0.0500, sse=9769143.0, rms=14.507 (1.355%) 030: dt: 0.0500, sse=9532542.0, rms=14.308 (1.372%) positioning took 1.1 minutes mean border=66.7, 170 (63) missing vertices, mean dist 0.7 [0.1 (%2.5)->1.1 (%97.5))] %20 local maxima, %42 large gradients and %33 min vals, 220 gradients ignored tol=1.0e-04, sigma=2.0, host=blg43, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=10331505.0, rms=14.965 031: dt: 0.5000, sse=8563002.0, rms=13.456 (10.083%) 032: dt: 0.5000, sse=7159869.5, rms=12.127 (9.881%) 033: dt: 0.5000, sse=5878208.5, rms=10.782 (11.086%) 034: dt: 0.5000, sse=4875122.5, rms=9.591 (11.050%) 035: dt: 0.5000, sse=4034045.5, rms=8.469 (11.696%) 036: dt: 0.5000, sse=3496215.2, rms=7.665 (9.498%) 037: dt: 0.5000, sse=3129829.8, rms=7.067 (7.805%) 038: dt: 0.5000, sse=2952657.0, rms=6.758 (4.366%) 039: dt: 0.5000, sse=2818515.8, rms=6.515 (3.600%) 040: dt: 0.5000, sse=2769431.8, rms=6.423 (1.415%) 041: dt: 0.5000, sse=2711094.5, rms=6.313 (1.705%) rms = 6.29, time step reduction 1 of 3 to 0.250... 042: dt: 0.5000, sse=2698098.0, rms=6.287 (0.409%) 043: dt: 0.2500, sse=2425668.2, rms=5.691 (9.483%) 044: dt: 0.2500, sse=2368462.2, rms=5.567 (2.172%) rms = 5.61, time step reduction 2 of 3 to 0.125... 045: dt: 0.1250, sse=2326282.5, rms=5.470 (1.747%) 046: dt: 0.1250, sse=2274792.5, rms=5.347 (2.247%) rms = 5.33, time step reduction 3 of 3 to 0.062... 047: dt: 0.1250, sse=2267161.2, rms=5.328 (0.356%) positioning took 2.6 minutes mean border=63.7, 3606 (21) missing vertices, mean dist 0.3 [0.2 (%18.4)->0.5 (%81.6))] %37 local maxima, %26 large gradients and %31 min vals, 155 gradients ignored tol=1.0e-04, sigma=1.0, host=blg43, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3679140.0, rms=7.461 048: dt: 0.5000, sse=3498413.0, rms=7.141 (4.291%) 049: dt: 0.5000, sse=3073924.2, rms=6.392 (10.486%) 050: dt: 0.5000, sse=3024084.0, rms=6.284 (1.691%) 051: dt: 0.5000, sse=2647549.5, rms=5.516 (12.219%) 052: dt: 0.5000, sse=2622148.0, rms=5.447 (1.258%) 053: dt: 0.5000, sse=2318157.0, rms=4.731 (13.141%) rms = 4.90, time step reduction 1 of 3 to 0.250... 054: dt: 0.2500, sse=1961319.9, rms=3.618 (23.525%) 055: dt: 0.2500, sse=1858529.6, rms=3.214 (11.169%) rms = 3.20, time step reduction 2 of 3 to 0.125... 056: dt: 0.2500, sse=1854472.8, rms=3.195 (0.590%) 057: dt: 0.1250, sse=1691024.1, rms=2.458 (23.070%) 058: dt: 0.1250, sse=1667983.9, rms=2.340 (4.784%) rms = 2.30, time step reduction 3 of 3 to 0.062... 059: dt: 0.1250, sse=1660051.8, rms=2.300 (1.738%) positioning took 2.2 minutes mean border=62.2, 4181 (18) missing vertices, mean dist 0.1 [0.2 (%21.7)->0.2 (%78.3))] %45 local maxima, %19 large gradients and %29 min vals, 169 gradients ignored tol=1.0e-04, sigma=0.5, host=blg43, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=2011070.5, rms=3.553 rms = 4.63, time step reduction 1 of 3 to 0.250... 060: dt: 0.2500, sse=1874595.2, rms=3.035 (14.573%) 061: dt: 0.2500, sse=1818315.4, rms=2.791 (8.028%) rms = 2.82, time step reduction 2 of 3 to 0.125... 062: dt: 0.1250, sse=1800009.1, rms=2.707 (3.040%) 063: dt: 0.1250, sse=1772033.5, rms=2.576 (4.826%) 064: dt: 0.1250, sse=1757805.2, rms=2.510 (2.572%) rms = 2.47, time step reduction 3 of 3 to 0.062... 065: dt: 0.1250, sse=1748278.6, rms=2.466 (1.744%) positioning took 1.3 minutes mean border=61.5, 8147 (15) missing vertices, mean dist 0.0 [0.2 (%28.2)->0.1 (%71.8))] %48 local maxima, %16 large gradients and %28 min vals, 144 gradients ignored tol=1.0e-04, sigma=0.2, host=blg43, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.563, l_nspring=0.625, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=1797875.4, rms=2.668 rms = 3.53, time step reduction 1 of 3 to 0.250... 066: dt: 0.2500, sse=1761241.2, rms=2.488 (6.753%) rms = 2.46, time step reduction 2 of 3 to 0.125... 067: dt: 0.2500, sse=1751158.8, rms=2.457 (1.258%) 068: dt: 0.1250, sse=1731564.5, rms=2.350 (4.345%) rms = 2.31, time step reduction 3 of 3 to 0.062... 069: dt: 0.1250, sse=1721891.5, rms=2.305 (1.898%) positioning took 0.9 minutes writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.area.pial vertex spacing 0.81 +- 0.37 (0.04-->7.30) (max @ vno 151832 --> 150629) face area 0.26 +- 0.21 (0.00-->5.18) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 218501 vertices processed 25000 of 218501 vertices processed 50000 of 218501 vertices processed 75000 of 218501 vertices processed 100000 of 218501 vertices processed 125000 of 218501 vertices processed 150000 of 218501 vertices processed 175000 of 218501 vertices processed 200000 of 218501 vertices processed 0 of 218501 vertices processed 25000 of 218501 vertices processed 50000 of 218501 vertices processed 75000 of 218501 vertices processed 100000 of 218501 vertices processed 125000 of 218501 vertices processed 150000 of 218501 vertices processed 175000 of 218501 vertices processed 200000 of 218501 vertices processed thickness calculation complete, 115:851 truncations. 34823 vertices at 0 distance 117412 vertices at 1 distance 131148 vertices at 2 distance 79970 vertices at 3 distance 34585 vertices at 4 distance 11923 vertices at 5 distance 3800 vertices at 6 distance 1227 vertices at 7 distance 534 vertices at 8 distance 250 vertices at 9 distance 139 vertices at 10 distance 92 vertices at 11 distance 67 vertices at 12 distance 62 vertices at 13 distance 58 vertices at 14 distance 36 vertices at 15 distance 24 vertices at 16 distance 7 vertices at 17 distance 8 vertices at 18 distance 5 vertices at 19 distance 6 vertices at 20 distance writing curvature file /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.thickness positioning took 18.1 minutes #-------------------------------------------- #@# Surf Volume rh Tue May 25 23:28:20 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_convert --volume sub-05 rh /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.volume masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label Total face volume 255425 Total vertex volume 253793 (mask=0) #@# sub-05 rh 253793 vertexvol Done #----------------------------------------- #@# Cortical Parc 2 rh Tue May 25 23:28:25 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-05 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.CDaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 1.4 using min determinant for regularization = 0.020 0 singular and 719 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 39 labels changed using aseg relabeling using gibbs priors... 000: 13061 changed, 218501 examined... 001: 3098 changed, 51266 examined... 002: 974 changed, 15996 examined... 003: 395 changed, 5361 examined... 004: 198 changed, 2274 examined... 005: 87 changed, 1125 examined... 006: 40 changed, 491 examined... 007: 16 changed, 227 examined... 008: 4 changed, 82 examined... 009: 2 changed, 21 examined... 010: 1 changed, 17 examined... 011: 0 changed, 4 examined... 6 labels changed using aseg 000: 366 total segments, 276 labels (4033 vertices) changed 001: 110 total segments, 20 labels (92 vertices) changed 002: 91 total segments, 1 labels (1 vertices) changed 003: 90 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 57 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 2144 vertices marked for relabeling... 2144 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 23 seconds. #----------------------------------------- #@# Cortical Parc 3 rh Tue May 25 23:28:48 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.presurf.mgz -seed 1234 sub-05 rh ../surf/rh.sphere.reg /opt/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ../label/rh.aparc.DKTatlas.annot setting seed for random number generator to 1234 using ../mri/aseg.presurf.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading atlas from /opt/freesurfer/average/rh.DKTaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.009 0 singular and 325 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 2250 labels changed using aseg relabeling using gibbs priors... 000: 2955 changed, 218501 examined... 001: 701 changed, 13496 examined... 002: 188 changed, 3993 examined... 003: 84 changed, 1090 examined... 004: 50 changed, 498 examined... 005: 28 changed, 289 examined... 006: 22 changed, 150 examined... 007: 15 changed, 122 examined... 008: 9 changed, 86 examined... 009: 5 changed, 49 examined... 010: 3 changed, 36 examined... 011: 4 changed, 17 examined... 012: 0 changed, 14 examined... 314 labels changed using aseg 000: 77 total segments, 44 labels (481 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 12 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1932 vertices marked for relabeling... 1932 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas.annot... classification took 0 minutes and 19 seconds. #----------------------------------------- #@# WM/GM Contrast rh Tue May 25 23:29:07 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts pctsurfcon --s sub-05 --rh-only Log file is /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts/pctsurfcon.log Tue May 25 23:29:07 UTC 2021 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer cd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts /opt/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.15 2016/02/12 21:43:15 zkaufman Exp $ Linux blg4313.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer mri_vol2surf --mov /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.wm.mgh --regheader sub-05 --cortex srcvol = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00002; 0.00000 0.00000 1.00000 -0.00001; 0.00000 -1.00000 0.00000 0.00003; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label Reading surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 116056 Masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.wm.mgh Dim: 218501 1 1 mri_vol2surf --mov /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.gm.mgh --projfrac 0.3 --regheader sub-05 --cortex srcvol = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Computing registration from header. Using /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/orig.mgz as target reference. -------- original matrix ----------- -1.00000 0.00000 0.00000 -0.00002; 0.00000 0.00000 1.00000 -0.00001; 0.00000 -1.00000 0.00000 0.00003; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label Reading surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Done reading source surface Reading thickness /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 137611 Masking with /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.cortex.label Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.gm.mgh Dim: 218501 1 1 mri_concat /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.wm.mgh /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/tmp.pctsurfcon.208338/rh.gm.mgh --paired-diff-norm --mul 100 --o /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.w-g.pct.mgh mri_segstats --in /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.w-g.pct.mgh --annot sub-05 rh aparc --sum /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --in /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.w-g.pct.mgh --annot sub-05 rh aparc --sum /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/stats/rh.w-g.pct.stats --snr sysname Linux hostname blg4313.int.ets1.calculquebec.ca machine x86_64 user bpinsard UseRobust 0 Constructing seg from annotation Reading annotation /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.w-g.pct.mgh Vertex Area is 0.408561 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation Reporting on 35 segmentations Using PrintSegStat mri_segstats done Cleaning up Started at Tue May 25 21:12:51 UTC 2021 Ended at Tue May 25 23:29:16 UTC 2021 #@#%# recon-all-run-time-hours 2.274 recon-all -s sub-05 finished without error at Tue May 25 23:29:16 UTC 2021 New invocation of recon-all Wed May 26 00:55:00 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05 /opt/freesurfer/bin/recon-all -autorecon-hemi rh -nohyporelabel -openmp 8 -subjid sub-05 -sd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer -notessellate -nosmooth1 -noinflate1 -noqsphere -nofix -nowhite -nosmooth2 -noinflate2 -nocurvHK -nocurvstats -nosphere -nosurfreg -nojacobian_white -noavgcurv -nocortparc -nopial -nocortparc2 -nocortparc3 -nopctsurfcon subjid sub-05 setenv SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Actual FREESURFER_HOME /opt/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a Linux blg4313.int.ets1.calculquebec.ca 3.10.0-1160.25.1.el7.x86_64 #1 SMP Wed Apr 28 21:49:45 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize unlimited memoryuse 67108864 kbytes vmemoryuse unlimited descriptors 51200 memorylocked unlimited maxproc 767933 maxlocks unlimited maxsignal 767933 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196638428 118562988 69134780 2008932 8940660 72914772 Swap: 0 0 0 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:00-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/05/26-00:55:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bpinsard Machine: blg4313.int.ets1.calculquebec.ca Platform: Linux PlatformVersion: 3.10.0-1160.25.1.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /opt/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /opt/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #----------------------------------------- #@# Parcellation Stats rh Wed May 26 00:55:01 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-05 rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 2171 960 2618 2.804 0.399 0.072 0.015 13 1.3 bankssts 1562 655 1861 2.365 0.897 0.109 0.032 24 1.9 caudalanteriorcingulate 5427 2247 6778 2.661 0.456 0.085 0.020 55 4.6 caudalmiddlefrontal 4380 1698 4259 2.220 0.484 0.102 0.030 54 6.2 cuneus 997 411 2044 3.589 0.710 0.104 0.041 15 2.1 entorhinal 6628 2798 10063 2.934 0.607 0.095 0.027 80 7.5 fusiform 15945 6422 20100 2.698 0.506 0.087 0.024 180 15.9 inferiorparietal 8253 3398 11905 2.791 0.660 0.092 0.028 97 10.1 inferiortemporal 2242 880 2631 2.365 0.895 0.095 0.029 24 2.8 isthmuscingulate 11488 4367 12171 2.398 0.606 0.102 0.036 152 18.5 lateraloccipital 5260 2271 7710 2.848 0.649 0.106 0.034 86 7.4 lateralorbitofrontal 7577 3040 7457 2.158 0.584 0.107 0.035 101 11.6 lingual 4125 1741 6227 2.825 0.709 0.095 0.030 60 5.4 medialorbitofrontal 8431 3479 12463 2.824 0.682 0.091 0.026 97 9.4 middletemporal 1380 559 1910 2.869 0.749 0.077 0.022 10 1.2 parahippocampal 3155 1306 4175 2.719 0.593 0.080 0.018 24 2.2 paracentral 2231 965 2666 2.569 0.517 0.075 0.017 18 1.6 parsopercularis 1835 750 2695 2.787 0.744 0.099 0.027 24 2.0 parsorbitalis 2840 1192 3673 2.613 0.715 0.087 0.023 27 2.8 parstriangularis 4933 1784 3673 2.190 0.436 0.092 0.040 89 8.8 pericalcarine 8916 3431 8248 2.151 0.483 0.071 0.018 67 6.8 postcentral 2209 933 2578 2.376 0.737 0.100 0.027 34 2.6 posteriorcingulate 13436 5174 15818 2.743 0.475 0.073 0.021 111 12.3 precentral 10271 4286 12607 2.585 0.572 0.091 0.025 109 11.5 precuneus 1272 504 1730 2.946 0.719 0.107 0.036 28 2.3 rostralanteriorcingulate 13605 5795 17225 2.464 0.493 0.106 0.031 225 18.8 rostralmiddlefrontal 16460 6887 23447 2.793 0.633 0.091 0.024 188 17.1 superiorfrontal 14708 5918 15488 2.308 0.433 0.084 0.022 157 12.8 superiorparietal 7907 3302 10694 2.736 0.673 0.078 0.019 65 6.7 superiortemporal 8404 3414 10526 2.685 0.534 0.087 0.020 89 6.7 supramarginal 909 391 1664 2.778 0.753 0.133 0.060 22 2.5 frontalpole 1176 516 2824 3.688 0.724 0.106 0.034 15 1.8 temporalpole 874 317 989 2.552 0.389 0.086 0.022 9 0.8 transversetemporal 5699 2387 7189 2.785 1.097 0.103 0.058 109 14.5 insula mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.pial.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab sub-05 rh pial computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 2171 891 2618 2.804 0.399 0.080 0.022 21 2.0 bankssts 1562 795 1861 2.365 0.897 0.096 0.023 25 1.3 caudalanteriorcingulate 5427 2648 6778 2.661 0.456 0.076 0.017 46 3.6 caudalmiddlefrontal 4380 2088 4259 2.220 0.484 0.086 0.024 52 4.5 cuneus 997 658 2044 3.589 0.710 0.098 0.021 9 1.0 entorhinal 6628 3640 10063 2.934 0.607 0.091 0.022 69 5.9 fusiform 15945 7839 20100 2.698 0.506 0.085 0.021 241 13.9 inferiorparietal 8253 4730 11905 2.791 0.660 0.100 0.026 136 9.1 inferiortemporal 2242 1102 2631 2.365 0.895 0.091 0.026 37 2.5 isthmuscingulate 11488 5419 12171 2.398 0.606 0.084 0.024 155 12.5 lateraloccipital 5260 2882 7710 2.848 0.649 0.101 0.028 71 6.4 lateralorbitofrontal 7577 3709 7457 2.158 0.584 0.095 0.026 115 8.9 lingual 4125 2406 6227 2.825 0.709 0.099 0.027 41 4.4 medialorbitofrontal 8431 4866 12463 2.824 0.682 0.100 0.024 92 9.2 middletemporal 1380 742 1910 2.869 0.749 0.090 0.022 10 1.4 parahippocampal 3155 1658 4175 2.719 0.593 0.086 0.018 27 2.4 paracentral 2231 1078 2666 2.569 0.517 0.081 0.020 29 1.8 parsopercularis 1835 1124 2695 2.787 0.744 0.105 0.023 15 1.9 parsorbitalis 2840 1502 3673 2.613 0.715 0.094 0.021 27 2.5 parstriangularis 4933 1536 3673 2.190 0.436 0.065 0.025 71 4.0 pericalcarine 8916 4056 8248 2.151 0.483 0.070 0.015 54 5.2 postcentral 2209 1118 2578 2.376 0.737 0.100 0.027 40 2.5 posteriorcingulate 13436 6021 15818 2.743 0.475 0.069 0.014 108 8.0 precentral 10271 5001 12607 2.585 0.572 0.095 0.024 118 11.3 precuneus 1272 645 1730 2.946 0.719 0.096 0.030 25 1.6 rostralanteriorcingulate 13605 7691 17225 2.464 0.493 0.104 0.024 142 14.5 rostralmiddlefrontal 16460 8963 23447 2.793 0.633 0.091 0.022 160 14.0 superiorfrontal 14708 7060 15488 2.308 0.433 0.083 0.021 153 11.7 superiorparietal 7907 4279 10694 2.736 0.673 0.094 0.021 80 7.5 superiortemporal 8404 4094 10526 2.685 0.534 0.082 0.022 99 6.9 supramarginal 909 742 1664 2.778 0.753 0.147 0.027 8 1.2 frontalpole 1176 948 2824 3.688 0.724 0.134 0.042 17 1.9 temporalpole 874 419 989 2.552 0.389 0.077 0.015 4 0.5 transversetemporal 5699 2591 7189 2.785 1.097 0.109 0.074 191 24.1 insula #----------------------------------------- #@# Parcellation Stats 2 rh Wed May 26 00:57:19 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab sub-05 rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 76 entries read (originally Simple_surface_labels2008.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 1631 680 2145 2.468 0.682 0.111 0.037 28 2.7 G&S_frontomargin 1920 756 2633 2.836 0.601 0.110 0.051 33 4.8 G&S_occipital_inf 2512 880 2871 2.490 0.580 0.078 0.026 24 2.7 G&S_paracentral 2167 894 3107 2.891 0.459 0.089 0.022 25 1.8 G&S_subcentral 2356 975 3201 2.411 0.515 0.123 0.048 52 5.0 G&S_transv_frontopol 4633 1945 6045 2.889 0.591 0.086 0.024 54 4.9 G&S_cingul-Ant 2047 872 2597 2.688 0.524 0.085 0.020 20 1.6 G&S_cingul-Mid-Ant 1868 803 2230 2.640 0.465 0.082 0.021 13 1.7 G&S_cingul-Mid-Post 813 342 1529 2.955 0.625 0.133 0.045 18 1.7 G_cingul-Post-dorsal 498 198 841 2.777 0.916 0.109 0.036 8 0.9 G_cingul-Post-ventral 4289 1569 4287 2.220 0.483 0.102 0.037 61 7.1 G_cuneus 1641 687 2588 2.850 0.534 0.088 0.023 21 1.7 G_front_inf-Opercular 684 266 1267 3.502 0.628 0.109 0.038 10 1.0 G_front_inf-Orbital 997 444 1557 2.620 0.630 0.091 0.028 12 1.2 G_front_inf-Triangul 6458 2736 10561 2.726 0.493 0.123 0.038 147 10.9 G_front_middle 10739 4458 18462 2.967 0.678 0.102 0.030 157 13.6 G_front_sup 769 339 1385 3.461 0.595 0.120 0.066 14 2.5 G_Ins_lg&S_cent_ins 925 374 1961 3.311 0.979 0.138 0.077 30 3.4 G_insular_short 3024 1174 4826 2.846 0.673 0.115 0.040 59 5.2 G_occipital_middle 2848 1099 3366 2.382 0.543 0.092 0.023 33 2.6 G_occipital_sup 3031 1215 5421 3.161 0.539 0.108 0.033 53 3.8 G_oc-temp_lat-fusifor 4649 1822 5064 2.176 0.625 0.116 0.039 77 7.8 G_oc-temp_med-Lingual 1905 729 3439 3.358 0.952 0.094 0.037 21 3.2 G_oc-temp_med-Parahip 3814 1638 7010 2.934 0.708 0.119 0.039 84 6.1 G_orbital 6217 2308 9595 2.817 0.543 0.100 0.034 109 8.4 G_pariet_inf-Angular 3891 1555 5780 2.808 0.556 0.098 0.025 55 3.7 G_pariet_inf-Supramar 4121 1630 5580 2.435 0.480 0.099 0.028 75 4.7 G_parietal_sup 3130 1068 2857 2.059 0.368 0.079 0.024 34 3.2 G_postcentral 5214 1827 7278 2.938 0.436 0.077 0.027 61 6.2 G_precentral 4456 1778 6833 2.771 0.616 0.109 0.037 77 7.4 G_precuneus 1226 531 2595 3.081 0.728 0.128 0.052 35 2.8 G_rectus 683 258 678 2.250 1.410 0.065 0.032 6 1.0 G_subcallosal 506 183 727 2.795 0.301 0.091 0.022 7 0.5 G_temp_sup-G_T_transv 2716 1117 4881 2.999 0.716 0.102 0.030 38 3.5 G_temp_sup-Lateral 2072 879 2495 2.720 1.196 0.091 0.054 42 5.2 G_temp_sup-Plan_polar 1225 506 1459 2.584 0.488 0.074 0.017 13 0.8 G_temp_sup-Plan_tempo 4697 1869 8070 2.901 0.685 0.106 0.037 81 7.7 G_temporal_inf 4610 1866 7997 2.957 0.658 0.102 0.032 69 6.4 G_temporal_middle 481 188 635 3.053 0.632 0.076 0.014 2 0.3 Lat_Fis-ant-Horizont 320 140 248 1.990 0.403 0.058 0.007 1 0.1 Lat_Fis-ant-Vertical 2329 980 2237 2.660 0.592 0.076 0.019 12 2.0 Lat_Fis-post 6869 2449 5908 2.128 0.580 0.105 0.039 89 12.2 Pole_occipital 3351 1434 7331 3.316 0.731 0.113 0.041 54 6.4 Pole_temporal 4583 1828 3780 2.335 0.519 0.085 0.032 69 6.9 S_calcarine 4878 2031 4079 2.287 0.546 0.064 0.014 18 3.2 S_central 1957 837 1956 2.264 0.443 0.078 0.020 18 1.6 S_cingul-Marginalis 609 261 711 3.155 0.771 0.077 0.023 3 0.6 S_circular_insula_ant 1624 689 1556 2.656 0.763 0.063 0.018 6 1.3 S_circular_insula_inf 1628 700 1514 2.638 0.412 0.067 0.019 6 1.3 S_circular_insula_sup 1356 606 1536 2.519 0.537 0.068 0.013 5 0.7 S_collat_transv_ant 718 288 650 2.332 0.484 0.107 0.026 7 0.9 S_collat_transv_post 3085 1319 2879 2.262 0.343 0.070 0.014 20 1.8 S_front_inf 3665 1555 3290 2.347 0.361 0.087 0.019 29 3.1 S_front_middle 3717 1563 3651 2.507 0.439 0.073 0.018 26 2.8 S_front_sup 815 334 671 2.343 0.257 0.067 0.011 3 0.5 S_interm_prim-Jensen 7194 3037 6208 2.258 0.333 0.074 0.016 43 4.4 S_intrapariet&P_trans 1007 421 741 2.176 0.363 0.086 0.017 7 0.6 S_oc_middle&Lunatus 2405 1028 2091 2.365 0.281 0.077 0.015 13 1.4 S_oc_sup&transversal 1011 416 1107 2.707 0.308 0.087 0.023 11 0.9 S_occipital_ant 1978 841 1888 2.701 0.412 0.072 0.016 9 1.4 S_oc-temp_lat 2814 1230 2751 2.499 0.505 0.075 0.016 13 1.9 S_oc-temp_med&Lingual 893 375 734 2.169 0.394 0.081 0.014 5 0.7 S_orbital_lateral 1099 500 1190 2.450 0.594 0.089 0.046 14 1.2 S_orbital_med-olfact 2346 996 2716 2.667 0.523 0.088 0.024 24 2.5 S_orbital-H_Shaped 4353 1790 4054 2.327 0.435 0.081 0.017 32 3.3 S_parieto_occipital 2060 782 924 1.584 0.648 0.089 0.019 24 1.5 S_pericallosal 3443 1464 2775 2.157 0.335 0.061 0.010 14 1.4 S_postcentral 3462 1451 3465 2.471 0.367 0.073 0.016 21 2.1 S_precentral-inf-part 2584 1095 2556 2.546 0.399 0.071 0.013 14 1.5 S_precentral-sup-part 654 263 590 2.314 0.438 0.072 0.011 3 0.3 S_suborbital 2238 939 2119 2.475 0.410 0.083 0.023 15 2.2 S_subparietal 2324 989 1881 2.268 0.533 0.069 0.011 9 1.2 S_temporal_inf 11459 4922 12096 2.651 0.443 0.071 0.014 58 6.7 S_temporal_sup 470 189 455 2.589 0.375 0.073 0.013 2 0.3 S_temporal_transverse #----------------------------------------- #@# Parcellation Stats 3 rh Wed May 26 00:58:34 UTC 2021 /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/scripts mris_anatomical_stats -th3 -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas.stats -b -a ../label/rh.aparc.DKTatlas.annot -c ../label/aparc.annot.DKTatlas.ctab sub-05 rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 1893 784 2330 2.433 0.874 0.111 0.033 31 2.5 caudalanteriorcingulate 5623 2339 7086 2.665 0.453 0.086 0.020 59 4.7 caudalmiddlefrontal 5253 2030 5158 2.229 0.488 0.098 0.029 61 7.0 cuneus 949 380 2000 3.731 0.673 0.096 0.035 10 1.6 entorhinal 5851 2458 8229 2.887 0.565 0.091 0.023 64 5.4 fusiform 15732 6327 19957 2.701 0.509 0.088 0.024 177 15.8 inferiorparietal 9037 3739 13814 2.842 0.682 0.096 0.032 119 13.1 inferiortemporal 2266 884 2564 2.336 0.901 0.093 0.028 23 2.8 isthmuscingulate 11848 4500 12586 2.394 0.609 0.101 0.035 152 18.4 lateraloccipital 6732 2877 9687 2.742 0.744 0.112 0.045 136 12.1 lateralorbitofrontal 7296 2952 7215 2.162 0.572 0.107 0.034 94 10.8 lingual 3786 1584 5705 2.661 0.943 0.097 0.037 64 5.5 medialorbitofrontal 10234 4265 14622 2.813 0.647 0.088 0.024 107 10.5 middletemporal 1526 615 2094 2.864 0.758 0.080 0.026 13 1.6 parahippocampal 3275 1356 4446 2.746 0.595 0.081 0.019 25 2.4 paracentral 2667 1132 2979 2.468 0.542 0.078 0.018 22 2.0 parsopercularis 1418 578 2236 3.119 0.815 0.088 0.023 13 1.3 parsorbitalis 2873 1207 3737 2.611 0.652 0.091 0.025 32 3.2 parstriangularis 4979 1790 3704 2.191 0.440 0.092 0.040 91 9.0 pericalcarine 9955 3863 9453 2.180 0.497 0.073 0.019 78 7.7 postcentral 2298 968 2690 2.398 0.737 0.099 0.027 34 2.7 posteriorcingulate 12865 4918 15283 2.747 0.483 0.073 0.021 107 12.0 precentral 10747 4440 13204 2.567 0.575 0.091 0.026 118 12.4 precuneus 1600 647 2247 2.947 0.706 0.105 0.035 34 2.8 rostralanteriorcingulate 9211 3953 11547 2.462 0.482 0.101 0.028 139 11.8 rostralmiddlefrontal 21330 8967 29214 2.710 0.617 0.094 0.027 266 24.2 superiorfrontal 12106 4911 12526 2.296 0.408 0.083 0.022 131 10.1 superiorparietal 10719 4523 15381 2.840 0.755 0.084 0.024 108 11.6 superiortemporal 7802 3189 9600 2.663 0.528 0.086 0.020 84 6.3 supramarginal 878 315 990 2.539 0.399 0.084 0.021 9 0.8 transversetemporal 4012 1707 5906 3.132 0.823 0.099 0.043 55 8.4 insula /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label #-------------------------------------------- #@# BA_exvivo Labels rh Wed May 26 00:59:42 UTC 2021 mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA1_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3962 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3962 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 993 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.label 4955 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA2_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6687 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6687 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 1249 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.label 7936 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA3a_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA3a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3980 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3980 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 727 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.label 4707 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA3b_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA3b_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4522 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4522 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 1207 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.label 5729 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA4a_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA4a_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 5747 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5747 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 2250 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.label 7997 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA4p_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA4p_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4473 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4473 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 1409 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.label 5882 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA6_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA6_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 12256 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 12256 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 4820 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.label 17076 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA44_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA44_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6912 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6912 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 2360 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.label 9272 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label --trgsubject sub-05 --trglabel ./rh.BA45_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA45_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 5355 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 5355 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 1895 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.label 7250 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label --trgsubject sub-05 --trglabel ./rh.V1_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.V1_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 4727 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4727 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 6371 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.label 11098 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label --trgsubject sub-05 --trglabel ./rh.V2_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.V2_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 8016 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 8016 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 8811 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.label 16827 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label --trgsubject sub-05 --trglabel ./rh.MT_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.MT_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1932 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1932 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 893 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.label 2825 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label --trgsubject sub-05 --trglabel ./rh.entorhinal_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.entorhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1038 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1038 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 391 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.label 1429 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label --trgsubject sub-05 --trglabel ./rh.perirhinal_exvivo.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.perirhinal_exvivo.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 752 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 752 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 321 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.label 1073 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 876 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 876 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 250 Checking for and removing duplicates Writing label file ./rh.BA1_exvivo.thresh.label 1126 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 2688 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2688 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 207 Checking for and removing duplicates Writing label file ./rh.BA2_exvivo.thresh.label 2895 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA3a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA3a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1698 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1698 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 241 Checking for and removing duplicates Writing label file ./rh.BA3a_exvivo.thresh.label 1939 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA3b_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA3b_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA3b_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 2183 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2183 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 597 Checking for and removing duplicates Writing label file ./rh.BA3b_exvivo.thresh.label 2780 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA4a_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4a_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA4a_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1388 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1388 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 545 Checking for and removing duplicates Writing label file ./rh.BA4a_exvivo.thresh.label 1933 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA4p_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA4p_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA4p_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1489 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1489 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 488 Checking for and removing duplicates Writing label file ./rh.BA4p_exvivo.thresh.label 1977 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA6_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA6_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA6_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 6959 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 6959 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 2538 Checking for and removing duplicates Writing label file ./rh.BA6_exvivo.thresh.label 9497 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA44_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA44_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA44_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1012 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1012 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 140 Checking for and removing duplicates Writing label file ./rh.BA44_exvivo.thresh.label 1152 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.BA45_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.BA45_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.BA45_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 1178 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1178 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 282 Checking for and removing duplicates Writing label file ./rh.BA45_exvivo.thresh.label 1460 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.V1_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V1_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.V1_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3232 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3232 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 4746 Checking for and removing duplicates Writing label file ./rh.V1_exvivo.thresh.label 7978 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.V2_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.V2_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.V2_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 3437 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3437 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 4169 Checking for and removing duplicates Writing label file ./rh.V2_exvivo.thresh.label 7606 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.MT_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.MT_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.MT_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 268 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 268 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 76 Checking for and removing duplicates Writing label file ./rh.MT_exvivo.thresh.label 344 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.entorhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.entorhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.entorhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 694 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 694 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 228 Checking for and removing duplicates Writing label file ./rh.entorhinal_exvivo.thresh.label 922 mri_label2label: Done mri_label2label --srcsubject fsaverage --srclabel /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label --trgsubject sub-05 --trglabel ./rh.perirhinal_exvivo.thresh.label --hemi rh --regmethod surface srclabel = /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/label/rh.perirhinal_exvivo.thresh.label srcsubject = fsaverage trgsubject = sub-05 trglabel = ./rh.perirhinal_exvivo.thresh.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer FREESURFER_HOME /opt/freesurfer Loading source label. Found 291 points in source label. Starting surface-based mapping Reading source registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/fsaverage/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white Reading target registration /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 291 nlabel points Performing mapping from target back to the source label 218501 Number of reverse mapping hits = 121 Checking for and removing duplicates Writing label file ./rh.perirhinal_exvivo.thresh.label 412 mri_label2label: Done mris_label2annot --s sub-05 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose Reading ctab /opt/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label cmdline mris_label2annot --s sub-05 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.label --l rh.BA2_exvivo.label --l rh.BA3a_exvivo.label --l rh.BA3b_exvivo.label --l rh.BA4a_exvivo.label --l rh.BA4p_exvivo.label --l rh.BA6_exvivo.label --l rh.BA44_exvivo.label --l rh.BA45_exvivo.label --l rh.V1_exvivo.label --l rh.V2_exvivo.label --l rh.MT_exvivo.label --l rh.entorhinal_exvivo.label --l rh.perirhinal_exvivo.label --a BA_exvivo --maxstatwinner --noverbose sysname Linux hostname blg4313.int.ets1.calculquebec.ca machine x86_64 user bpinsard subject sub-05 hemi rh SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer ColorTable /opt/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo nlables 14 LabelThresh 0 0.000000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 152564 unhit vertices Writing annot to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.BA_exvivo.annot mris_label2annot --s sub-05 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose Reading ctab /opt/freesurfer/average/colortable_BA.txt Number of ctab entries 15 $Id: mris_label2annot.c,v 1.20 2016/01/07 23:28:11 greve Exp $ cwd /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label cmdline mris_label2annot --s sub-05 --hemi rh --ctab /opt/freesurfer/average/colortable_BA.txt --l rh.BA1_exvivo.thresh.label --l rh.BA2_exvivo.thresh.label --l rh.BA3a_exvivo.thresh.label --l rh.BA3b_exvivo.thresh.label --l rh.BA4a_exvivo.thresh.label --l rh.BA4p_exvivo.thresh.label --l rh.BA6_exvivo.thresh.label --l rh.BA44_exvivo.thresh.label --l rh.BA45_exvivo.thresh.label --l rh.V1_exvivo.thresh.label --l rh.V2_exvivo.thresh.label --l rh.MT_exvivo.thresh.label --l rh.entorhinal_exvivo.thresh.label --l rh.perirhinal_exvivo.thresh.label --a BA_exvivo.thresh --maxstatwinner --noverbose sysname Linux hostname blg4313.int.ets1.calculquebec.ca machine x86_64 user bpinsard subject sub-05 hemi rh SUBJECTS_DIR /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer ColorTable /opt/freesurfer/average/colortable_BA.txt AnnotName BA_exvivo.thresh nlables 14 LabelThresh 0 0.000000 Loading /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.orig 1 1530880 BA1_exvivo 2 16749699 BA2_exvivo 3 16711680 BA3a_exvivo 4 3368703 BA3b_exvivo 5 1376196 BA4a_exvivo 6 13382655 BA4p_exvivo 7 10036737 BA6_exvivo 8 2490521 BA44_exvivo 9 39283 BA45_exvivo 10 3993 V1_exvivo 11 8508928 V2_exvivo 12 10027163 MT_exvivo 13 16422433 perirhinal_exvivo 14 16392598 entorhinal_exvivo Mapping unhit to unknown Found 180454 unhit vertices Writing annot to /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/label/rh.BA_exvivo.thresh.annot mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.stats -b -a ./rh.BA_exvivo.annot -c ./BA_exvivo.ctab sub-05 rh white computing statistics for each annotation in ./rh.BA_exvivo.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 1393 441 1440 2.202 0.413 0.097 0.027 21 1.5 BA1_exvivo 4356 1755 3771 2.130 0.330 0.064 0.014 25 2.4 BA2_exvivo 1600 688 1108 2.163 0.423 0.079 0.019 8 1.3 BA3a_exvivo 3149 1204 2611 1.947 0.425 0.064 0.018 20 2.5 BA3b_exvivo 2765 897 3307 2.910 0.441 0.059 0.021 19 2.6 BA4a_exvivo 2194 859 2323 2.736 0.472 0.059 0.013 8 1.3 BA4p_exvivo 13599 5581 19685 2.867 0.572 0.085 0.023 141 13.8 BA6_exvivo 5223 2219 6516 2.627 0.493 0.085 0.021 54 4.4 BA44_exvivo 5567 2314 7377 2.616 0.713 0.090 0.024 60 5.6 BA45_exvivo 8199 2940 6498 2.131 0.540 0.097 0.041 135 16.3 V1_exvivo 13705 5332 13499 2.216 0.546 0.105 0.032 169 18.7 V2_exvivo 2681 1111 3423 2.769 0.481 0.096 0.032 35 3.5 MT_exvivo 880 359 1856 3.621 0.574 0.079 0.022 6 0.9 perirhinal_exvivo 626 254 994 3.208 0.595 0.076 0.022 4 0.5 entorhinal_exvivo mris_anatomical_stats -th3 -mgz -f ../stats/rh.BA_exvivo.thresh.stats -b -a ./rh.BA_exvivo.thresh.annot -c ./BA_exvivo.thresh.ctab sub-05 rh white computing statistics for each annotation in ./rh.BA_exvivo.thresh.annot. reading volume /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/mri/wm.mgz... reading input surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... reading input pial surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.pial... reading input white surface /lustre03/project/6003287/datasets/cneuromod_processed/smriprep/sourcedata/freesurfer/sub-05/surf/rh.white... INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. Using TH3 vertex volume calc Total face volume 259885 Total vertex volume 258192 (mask=0) reading colortable from annotation file... colortable with 15 entries read (originally /opt/freesurfer/average/colortable_BA.txt) Saving annotation colortable ./BA_exvivo.thresh.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name atlas_icv (eTIV) = 1653081 mm^3 (det: 1.178470 ) lhCtxGM: 256160.873 505832.000 diff=-249671.1 pctdiff=-97.467 rhCtxGM: 254732.889 500365.000 diff=-245632.1 pctdiff=-96.427 lhCtxWM: 178195.530 407102.000 diff=-228906.5 pctdiff=-128.458 rhCtxWM: 179705.335 409193.000 diff=-229487.7 pctdiff=-127.702 SubCortGMVol 115338.000 SupraTentVol 999716.626 (1967040.000) diff=-967323.374 pctdiff=-96.760 SupraTentVolNotVent 970539.626 (1937863.000) diff=-967323.374 pctdiff=-99.669 BrainSegVol 2258964.000 (2252858.000) diff=6106.000 pctdiff=0.270 BrainSegVolNotVent 2221705.000 (1267774.626) diff=953930.374 pctdiff=42.937 BrainSegVolNotVent 2221705.000 CerebellumVol 283609.000 VentChorVol 29177.000 3rd4th5thCSF 8082.000 CSFVol 1976.000, OptChiasmVol 233.000 MaskVol 2805483.000 949 293 880 2.071 0.353 0.094 0.030 16 1.1 BA1_exvivo 2149 875 2001 2.150 0.272 0.055 0.011 9 0.9 BA2_exvivo 1486 641 978 2.158 0.373 0.077 0.018 6 1.2 BA3a_exvivo 2444 970 1820 1.849 0.339 0.057 0.015 10 1.7 BA3b_exvivo 1696 539 2167 2.966 0.500 0.066 0.027 16 2.0 BA4a_exvivo 1734 668 1767 2.796 0.489 0.054 0.012 5 0.9 BA4p_exvivo 8719 3555 12066 2.806 0.545 0.085 0.024 91 9.2 BA6_exvivo 969 409 1461 2.806 0.457 0.090 0.025 13 0.9 BA44_exvivo 1260 547 1679 2.408 0.602 0.092 0.023 14 1.2 BA45_exvivo 7917 2833 6223 2.148 0.531 0.096 0.040 129 14.9 V1_exvivo 7529 2868 6932 2.090 0.553 0.108 0.038 99 12.9 V2_exvivo 306 131 328 2.500 0.309 0.088 0.025 3 0.2 MT_exvivo 497 203 1059 3.580 0.451 0.076 0.021 3 0.5 perirhinal_exvivo 392 176 666 3.444 0.519 0.082 0.017 2 0.4 entorhinal_exvivo Started at Wed May 26 00:54:57 UTC 2021 Ended at Wed May 26 01:06:09 UTC 2021 #@#%# recon-all-run-time-hours 0.187 recon-all -s sub-05 finished without error at Wed May 26 01:06:09 UTC 2021